Polistes canadensis: 106789002
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Entry
106789002 CDS
T05611
Name
(RefSeq) probable DNA mismatch repair protein Msh6
KO
K08737
DNA mismatch repair protein MSH6
Organism
pcf
Polistes canadensis
Pathway
pcf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pcf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
106789002
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pcf03400
]
106789002
DNA repair and recombination proteins [BR:
pcf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
106789002
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
MutS_II
AAA_22
PilJ
NPV_P10
Motif
Other DBs
NCBI-GeneID:
106789002
NCBI-ProteinID:
XP_014608273
LinkDB
All DBs
Position
Unknown
AA seq
1129 aa
AA seq
DB search
MSKINTLYNYFTSPKTVKQKDNKDNKVTNTETPGTPKSGRKNKEQKKIEEKENRQTDIRK
RNWKNEESDDNEEIVPVQTKRRRIIIPDDNSEDSGDSFKPDSADDDSESELSEGVTESEI
DTQEEETPEKKPRKPVIAKGSRKGKTAPKQSGKKEIKSITASQSQEQSTSVPVTPADSWP
HLKYDFLQPDKRRDINRRLPNNPDYDSKTVHVPLDFLNNQTPAMRQWWEIKSKHFDCVLF
FKVGKFYELYHMDAVTGVNELNLTYMRGEFAHSGFPEIGYGRFSTSLIERGYKIARIEQT
ETPDMMTQRCSKMSKVTKYDKVVKREICQISTKGTRVHTPLEVDVSTPNSNYLLSLVQKC
KSGVNSSFGVCFIDTTIGDFHLGEFVDDCHNSRLLTLFAHYPPVHIVYERGNLSPTVLKI
LNNSMAVAYKESLQRDVEFWTAANTLKYLHEGEYFKKEKDSSFVWPEGLQPYLSEGDSLG
LTPAEDTELAVRALGGCIYLLKEYLLDQQLLAQAQFKTYIPPDFFNDNERTETKLMNNMV
LDAITINNLRIFGEGSLMKTLDYCATAFGKRLLREWICRPSCRKNIIKERQEAIQELMGK
VNVVQSIRSVLSNLPDLERLLSKIHALGNKAKLWNHPEGRAIMFEGQTYSKRKIMDFTTA
LNGFEKVLEIIDLCSDFKTNLISRCTKFEPEGEFPHLRETLDYFKTAFDHEEAKKQGCIV
PKKGVDDEYDSVLSQLEEIKEDLDAYLAKQRKHFGVKVTFFGHDRKRFQLEVPDSQIKKV
GSGYELTSQRKGFKRYYTAEAKELLARQTSAEETRDKVLKDLNRRIFAKFSEKYDMWHMA
IHKIAILDVLISLAEYAHSGDMCIPEIHDANNGEIFIDIKDGKHPCILSDNFIPNDTSIA
KDQTASVIILTGPNMGGKSTLMRQIGLLTIMAQIGCHVPASSCNLTLVDRIFTRLGANDD
ILAGQSTFLVELTETSAILKHATPYSLVLLDELGRGTSTYDGTAIAASVVNELTKLKCRT
LFSTHYHSLVEDYKNNPDVTLVHMACMVETEEEEEVSQETVTFLYKLSEGACPKSYGFNA
ARLAGIPLAITNRSREIAKKMEQETINKHLFISLCKANESEIRTLIASI
NT seq
3390 nt
NT seq
+upstream
nt +downstream
nt
atgtctaaaataaatacattgtacaattattttacatcaccaaagactgttaaacaaaaa
gataataaagataataaagttacgaatactgaaacaccaggaacaccaaaaagtggacga
aagaacaaagaacagaaaaaaatagaagaaaaagaaaatcgtcaaactgatatacgcaaa
agaaattggaaaaatgaggagtcggatgataacgaagaaattgtaccggttcaaaccaaa
cgacgtagaattattatacccgatgataatagcgaagattctggggatagttttaaacca
gattcagcagatgacgatagcgaatctgaattatctgaaggtgttacagaaagtgaaata
gatactcaagaagaagaaactcctgagaagaaaccaagaaagcctgtaattgccaaaggt
tcacgtaaaggaaaaacagcacccaaacagtcagggaaaaaggaaataaaatcaattact
gcatcccaatctcaggaacaatcaacaagtgtacctgttactccggcagattcatggcct
cacttaaaatatgattttcttcaacctgataaaagaagagatattaatagaagactaccg
aacaatccagactatgattctaagactgttcacgttccattggatttccttaacaatcag
acacctgccatgagacagtggtgggaaatcaaaagcaaacactttgattgcgttctattt
ttcaaagttggaaagttttatgaattgtatcacatggatgcagttactggagttaatgaa
cttaatctaacatacatgcgtggagaatttgcacattctggtttcccagaaattggatat
ggacgcttttcaacgagtcttattgaaagaggatataagattgcacgtattgaacaaact
gaaacaccagacatgatgacacaacgttgtagtaaaatgtccaaagtaactaaatacgac
aaggttgtaaaacgcgagatttgtcaaataagtacaaagggtactagagttcatactcct
ttggaagttgacgtatctacacctaattctaattatcttctctctttggttcaaaaatgt
aaatcaggagtaaacagcagttttggagtatgtttcatagatacaacgattggtgacttt
catcttggagaatttgtggatgattgtcacaattccagactattgaccttatttgcacat
tatccaccagtccatattgtttacgaacgcggaaatttatcaccaaccgtattgaaaatt
ctaaataattcaatggcagttgcctacaaggaatctctacaacgcgatgtagaattttgg
actgcagcaaacacgttgaaatatcttcacgaaggagaatattttaaaaaagagaaagat
tcaagttttgtttggcctgaaggtttacaaccttatttaagtgaaggagatagtttgggt
ttaactcctgctgaagatacagaattagcagtacgtgctcttggaggatgcatatattta
cttaaagagtatttactcgatcaacaattattggcacaggcacaatttaagacatatata
ccacctgattttttcaatgacaatgaacgtacagaaacaaaacttatgaataatatggtg
ttggacgccattacaatcaacaatctacgaatttttggagaaggttctcttatgaaaaca
ttggattattgtgcaactgcatttggtaaaaggttattacgagaatggatatgcagacca
tcttgccgtaaaaatattataaaagagcgtcaagaggctatacaagaattaatgggaaaa
gtgaatgtagtgcagtctattcgatctgtgttgtcgaatcttccagatttagaaagatta
ttaagcaaaatacatgcattaggaaataaagctaaattatggaatcatcctgaaggaaga
gcaataatgttcgagggtcagacgtactcgaaaagaaagatcatggattttactacagct
ttaaatggatttgagaaagtattggagattattgatttgtgttctgatttcaaaactaat
ttgataagtcgttgtaccaaatttgagccggaaggagaatttcctcatttgagagagacg
ctcgattattttaaaacagcattcgatcacgaggaagcaaagaaacaaggatgtatcgtt
cctaaaaaaggagtggatgacgaatatgactcagtgttatctcagttggaagaaataaag
gaagatttagatgcttacttagcaaagcaaagaaaacattttggcgttaaggtaacattc
ttcggtcacgacagaaaaagatttcagcttgaagttccagattctcaaataaaaaaagta
ggatcgggatacgaattaacatcccaacgtaaaggcttcaagcgttactataccgcggaa
gcaaaagaacttttagcaagacaaacgagcgccgaagaaactagagacaaagttttgaag
gatctgaacagacgaatattcgccaagtttagcgagaagtatgatatgtggcatatggct
attcataaaatagccattttagatgttctcatatctcttgccgaatatgctcatagcggt
gatatgtgcattccagaaattcatgatgcgaacaatggtgaaatcttcatcgatatcaaa
gatggaaagcatccgtgtatattgtcagataactttattcccaatgatacttcaattgct
aaagatcagacagcttcggtaattattttaaccggtccaaatatgggtggtaaatcgact
ctgatgcgtcaaataggattgttaacgatcatggcacaaataggttgtcacgtaccagca
agttcatgtaatctaacattggtggatcgtatttttacaagattaggagcaaacgatgac
attctagctggccagagtacattcctggtagaattaacagaaacttctgcaatattaaaa
cacgccacaccttactctttagttttgctagacgaattaggtcgtggtacttcgacgtat
gatggtacagcaatagctgcgtcagttgttaacgaactgacgaagttaaaatgtcgtaca
ttattttcaacgcattaccactcattggtagaagattacaaaaacaatccagacgtaaca
ttagtacacatggcatgtatggtagaaactgaagaagaggaagaagtatctcaagaaact
gttacatttttatataaactcagcgaaggtgcttgtcctaagtcttatggattcaatgca
gcaagattggctggtattccacttgctattacaaacagatcacgtgaaattgctaaaaaa
atggaacaggaaactattaacaaacacctcttcattagtctctgtaaagctaatgagtct
gagataagaactcttattgcaagtatttaa
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integrated database retrieval system
