Polistes canadensis: 106789801
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Entry
106789801 CDS
T05611
Name
(RefSeq) ATP-dependent RNA helicase WM6
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
pcf
Polistes canadensis
Pathway
pcf03013
Nucleocytoplasmic transport
pcf03015
mRNA surveillance pathway
pcf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pcf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106789801
09122 Translation
03013 Nucleocytoplasmic transport
106789801
03015 mRNA surveillance pathway
106789801
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcf03019
]
106789801
03041 Spliceosome [BR:
pcf03041
]
106789801
Enzymes [BR:
pcf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
106789801
Messenger RNA biogenesis [BR:
pcf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
106789801
Spliceosome [BR:
pcf03041
]
Complex C
Other components
EJC/TREX
106789801
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
106789801
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
106789801
NCBI-ProteinID:
XP_014609782
LinkDB
All DBs
Position
Unknown
AA seq
424 aa
AA seq
DB search
MADNDDLLDYEDEEQTEQVVDGSGDVPAKKEVKGTYVSIHSSGFRDFLLKPEILRAIVDC
GFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLELTENQVYVLVMCHTR
ELAFQISKEYERFSKYMPYVKVAVFFGGLPIQKDEEVLKNTCPHIVVGTPGRILALVRNK
KLNLKHLKHFILDECDKMLELLDMRRDVQEIFRSTPHGKQVMMFSATLSKDIRPVCKKFM
QDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVQRCMAL
AQLLTEQNFPAIGIHRGMTQEERLSRYQQFKDFQKRILVATNLFGRGMDIERVNIVFNYD
MPEDSDTYLHRVARAGRFGTKGLAITLVSDENDAKILNDVQERFDVNITELPDEIDLASY
IEGR
NT seq
1275 nt
NT seq
+upstream
nt +downstream
nt
atggctgataatgacgatcttttggattatgaagatgaggaacaaactgagcaagtagtt
gatggaagtggagatgttccagccaagaaagaagttaaaggcacatatgtgtctattcac
agcagtggtttcagagattttcttcttaaaccagaaatattaagagctattgttgattgt
ggatttgaacatccttctgaagtacaacatgaatgtattcctcaagctgtactcggtatg
gatattctatgtcaagcaaaatctggtatgggaaaaactgctgtatttgtattagccaca
ttacaacaattagaattaacagagaaccaagtctatgtcttagtaatgtgccatacaaga
gaacttgctttccaaattagcaaggaatatgagaggttcagcaaatatatgccttatgta
aaggtagcagtgttctttggaggattaccaattcaaaaagatgaagaagttttaaagaat
acttgcccacatattgtagtaggcacaccaggtcgtattcttgcccttgttcggaataaa
aagttaaaccttaaacatttgaaacacttcatacttgatgaatgtgacaaaatgttggaa
ttgttagatatgcgcagagatgtacaggagatattcaggagcacaccacatggtaaacaa
gtcatgatgttcagcgctacgctatccaaagacatccgtcctgtctgcaagaaatttatg
caagatcccatggaagtctatgttgatgacgaagcaaagctaacattacacggcctccaa
caacattacgtgaaacttaaagaaaacgagaaaaacaagaagcttttcgaattattagat
gtacttgaattcaatcaggttgtaatattcgttaaatcagtacaaagatgcatggctctg
gcacaactactaacagaacaaaattttcctgcaattggaattcatagaggaatgacccaa
gaagaacgtttatcaagataccaacaattcaaagattttcaaaaacgaattttagtagct
actaatttatttggacgagggatggatattgaacgtgttaatatcgtatttaattacgac
atgcccgaagattctgatacgtaccttcacagagtagcgcgagcaggacgttttggtaca
aagggtcttgccatcacgttagtaagcgatgaaaatgatgccaaaatattaaatgacgta
caggaaagatttgacgtaaacattacagaattgccagatgaaatagatcttgcatcatat
attgaaggacgataa
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