Polistes canadensis: 106790902
Help
Entry
106790902 CDS
T05611
Name
(RefSeq) regulator of nonsense transcripts 1 homolog
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
pcf
Polistes canadensis
Pathway
pcf03013
Nucleocytoplasmic transport
pcf03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pcf00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
106790902
03015 mRNA surveillance pathway
106790902
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcf03019
]
106790902
Enzymes [BR:
pcf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
106790902
5.6.2.5 RNA 5'-3' helicase
106790902
Messenger RNA biogenesis [BR:
pcf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
106790902
mRNA cycle factors
Common to processing body (P body) and stress granule
106790902
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_19
AAA_30
ResIII
SLFN-g3_helicase
UvrD-helicase
NAT10_TcmA_helicase
DEAD
NPHP3_N
ATPase
SRP54
nSTAND3
AAA_22
AAA_16
nSTAND_NTPase5
AAA_10
AAA
AAA_32
Motif
Other DBs
NCBI-GeneID:
106790902
NCBI-ProteinID:
XP_014611633
LinkDB
All DBs
Position
Unknown
AA seq
1119 aa
AA seq
DB search
MSVDAYGPSSQTLTFLDTEEADLIGADTQGSEFDFTDFTLPSPSQTQASQHDAVQSQPSQ
PMQVNGTGGSSSLDLKITGAAQSLADLQFEEEEEEAYYNRDLPEHACKYCGIHEASCVVM
CNVCRKWFCNGRGNTSGSHIINHLVRAKHKEVTLHRDGPLGETVLECYSCAVRNVFVLGF
IPAKADSVVVLLCRQPCAAQSSLKDMNWDQEQWKPLIEDRSFLAWLVKIPSEQEQLRARQ
ISAQQINKLEELWRDNVDATFQDLEKPGVDEEPQQVLLRYEDGYQYQNIFGPLVKLEADY
DKRLKESQTQENIEVRWDVGLNKKTIAYFMLAKTDGDMKLMHGDELRLRYLGELHKPWSG
IGHVIKIPDNYGEEVGIELKNNAGAPTECMSNFVVDFIWKSTSFDRMQLALRKFAVDDTS
VSAYIYHRLLGHEVEEVLFRCHLPKHFSAPNLPDLNRSQVYAVKHAVQRPLSLIQGPPGT
GKTVTSATIVYQLVKQNGGPVLVCAPSNTAVDQLTEKVHKSNLKVVRLCAKSREAIDSPV
SFLALHNQIKNMETNTELQKLQQLKDETGELSSVDEKRYRLLKKAAEKELLEAADVICCT
CVGAGDPRLHRLKFHSILIDESMQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAA
RAGLSQSLFERLVVLGIRPFRLEVQYRMHPDLSRFPSNFFYEGSLQNGVCADERKLLKID
FPWPAPDKPMFFYVTQGQEEIAGSGTSYLNRTEASNVEKITTRFLRCGVKPEQIGVITPY
EGQRAYLVQYMQYQGSLHSKLYQEIEVASVDAFQGREKDIIIMSCVRSNEHQGIGFLNDP
RRLNVALTRAKYGIIIVGNPKVLSKQPLWNHLLSFYKEQKVLVEGPLNNLKESMIQFAKP
KKLVNAANPGSHFMTTSMYDAREVLIPGSVYDRSGSQVNGNQSHNPYYQRNVPLDIFSRT
HDTISYISPERAQSALNNVPVPVGMFMNMAHVPPRFYNQHQQALQARQNQRNKRGTATSK
NKSNTRMGKLSQTEQNTQPYSQPGLPLTQGTTQGMSQPGFSLSQPGLSQAELSQDSFAVG
EFQSQMDGLLSQDSTYQGDRSGFYQSGQSQAGGQFSQPY
NT seq
3360 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtcgatgcttatgggccaagtagccaaactctaacgttccttgataccgaggaa
gctgatttaataggtgccgatactcaaggaagtgaatttgatttcacggactttacttta
ccatcgccaagccagacacaggcttcgcaacatgatgcggttcaaagtcaaccgagtcag
ccaatgcaggttaatggaacaggcggtagttcatcattggacttaaaaattactggagct
gctcaaagtcttgctgacttacaatttgaagaagaagaagaagaggcatattataatcgc
gatttaccagaacatgcatgcaaatactgtggtattcacgaagcctcatgcgttgtaatg
tgcaatgtatgtcgtaaatggttctgcaatggaagaggtaatacatctggttctcatatt
atcaatcatcttgttcgagcaaaacataaagaagttacattgcacagagatggaccattg
ggagaaactgtgttagaatgttattcttgtgcagttagaaatgtgtttgttcttggtttt
ataccagctaaagcagattcagttgtcgtactactatgtcgacaaccttgtgcagctcag
agctctctaaaagatatgaattgggatcaagaacagtggaaacctttgattgaagatcgt
agtttcttagcatggcttgtaaaaataccgtctgaacaagaacaactaagagccagacaa
atctctgctcagcagattaataaattggaagaattgtggcgagacaatgttgacgcgact
tttcaagaccttgagaagcctggtgtagatgaagaaccgcagcaagtcttgctacgttac
gaagatggatatcaatatcagaatatttttggtccgctcgttaagctggaagctgattac
gacaaacgtttaaaggaatcccaaactcaagaaaatattgaagtacgatgggatgttggt
ttgaacaaaaagacaatagcatacttcatgttagctaagactgatggtgatatgaaatta
atgcatggagatgaattaagacttcgttatttgggagaacttcataaaccatggtctggt
attggacatgttatcaaaattcctgacaactatggagaggaagttggtatagagttgaaa
aataacgcaggtgctcctacagagtgcatgagtaattttgttgttgatttcatttggaaa
agtacaagctttgatcggatgcaactagcattacgaaaatttgctgttgatgacacatct
gtatcagcttatatatatcatagattgttgggtcatgaagtagaagaagttctatttcgt
tgtcatctcccaaaacattttagtgctcctaacttaccagatttaaatcgatctcaagta
tatgctgtaaagcatgctgtacaaagacccttgtctttgatccaaggtccaccgggtaca
ggaaaaactgtaactagcgctacgatagtttatcaactagtaaaacaaaatggaggtcca
gtacttgtctgtgcaccatctaacactgcagttgatcaacttaccgagaaggtacataaa
tctaatttaaaagttgtacgtctttgtgcaaaatcacgagaagctattgattcccctgtg
agtttcctcgcattgcacaatcaaatcaaaaatatggaaacaaatacagaattacaaaag
ttacaacaattaaaagatgaaactggtgaattgtcaagcgtcgatgaaaaacgttataga
ctactaaagaaagctgcagaaaaggaattgttagaggcagctgatgtaatatgttgcact
tgcgttggtgcaggtgatccaagattgcacagattgaaattccactctatacttatagac
gaaagcatgcaagcaacggaaccagaatgtatggtacctgttgttcttggagctaagcaa
ttaattcttgttggagatcattgtcaattaggacctgttgttatgtgcaagaaagctgca
agagcaggattgtctcaatcgctatttgaaagactggttgtccttggcattaggcctttc
cgacttgaagtgcaatatcgtatgcatccagatctttcacgatttccgtctaatttcttt
tatgaaggctctcttcaaaatggagtatgtgcggatgaaagaaaattattgaaaattgat
tttccttggcctgctcctgacaagccaatgttcttctatgtaacacaaggccaagaagaa
atagccggcagtggtacatcttacttgaaccgtactgaagcatctaatgtagaaaagata
actacaagattcttacgttgtggtgtaaagccagaacaaataggtgtaataacaccttat
gaaggacaaagagcatacttagtgcaatacatgcaatatcaaggttcgcttcactccaaa
ttatatcaagaaatagaagttgcaagtgtcgatgcttttcaaggacgtgaaaaagatatt
ataattatgtcttgcgtaagatctaatgagcatcaaggtattggatttttaaatgatcct
agaagattaaacgttgcattgactcgtgcaaaatacggtatcatcatcgtaggaaatcca
aaagtactttcaaaacaaccactgtggaatcatttgctgagtttttacaaggagcagaag
gttcttgtagaagggccattgaataatttgaaagaatcaatgatacaatttgctaaacca
aaaaagcttgttaatgctgctaatccaggatcacactttatgactacgtcaatgtacgat
gctagagaagttttaattcctggttcagtatacgatcgttccggtagtcaagttaacgga
aatcaaagtcacaatccgtattatcagagaaatgtgccattggatatattcagtagaaca
cacgacacgataagttatataagcccagaaagagcgcaaagtgctttgaataatgtaccc
gtaccagttggtatgtttatgaatatggcacacgtacctccacgtttctacaatcaacac
caacaagctttacaagcaagacaaaatcaacgtaataaacgtggtacagctacatctaag
aacaaatcgaacacacgtatgggtaagctaagtcaaactgaacaaaacacacaaccatat
agccaaccaggattaccattgacgcaaggtacaactcagggtatgtctcaaccaggattc
agtctatctcagcctggtttaagtcaagccgaactttctcaagattcattcgcagtagga
gaatttcaatcacaaatggacggtctattgtcccaagattctacttatcaaggcgataga
agtggtttttatcaatctggtcaatcacaagccgggggacaattctcccagccatactga
DBGET
integrated database retrieval system
