Polistes canadensis: 106791205
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Entry
106791205 CDS
T05611
Name
(RefSeq) exosome component 10
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
pcf
Polistes canadensis
Pathway
pcf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106791205
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcf03019
]
106791205
Messenger RNA biogenesis [BR:
pcf03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
106791205
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Lipase
DNA_pol_A_exo1
PMC2NT
HRDC
Abhydrolase_1
DUF900
Abhydrolase_6
Lipase_3
DUF676
LIDHydrolase
Palm_thioest
GRIN_C
RNase_H_2
Hydrolase_4
Motif
Other DBs
NCBI-GeneID:
106791205
NCBI-ProteinID:
XP_014612175
LinkDB
All DBs
Position
Unknown
AA seq
1284 aa
AA seq
DB search
MEPKENWDEDNEILVENEKKSEEIIPGFASFDDYLKEAFSVIKDGIKASNNFPIEENYNY
YECFPSFNKVKNDDSERLLKMMQKIINLSGVGGNIGRRDIEEQFDLLLETNDVYLDKAGL
CMDEESGIVKNPEIELVVSQTRKDITAGSWNISSTIKKQSSDASTKAQAVRLLTARNIQR
PQLTFKDKIDNSLKPWEPKIKYKPNSLKPLAIYLEETEDGEVFCHPYDFELNKFQAPENQ
LQKREPVKYKELHETPLIMVNKPEDIKMLLDDLKKYKEIAVDLEHHSYRSFQGITCLMQI
STVDTDYIIDTLVLRSELHELNEIFTKPTILKVFHGADFDIQWLQRDLSIYVVNMFDTHQ
AAKQLNLPYLSLAYLLKKFCNVDPNKHFQLADWRIRPLPDELLKYAREDTHYLLHIKDVL
RNALIDSSNGKTNILKAVYDRSTELCKITYIKPIWTEESYMDMYRKSQKIFNNKQIYALK
ELHKWRDMTAREEDDSTGYVLPNHMLLNIAETLPREMQGILACCNPIPPLLRQNLLKLHK
IILKARDQPLIKPVEETDVRPRFAQRNHAVNSDAWTYSPHDIPSDAEARADLPCLLDQCK
ITEKSYSNINLKHTITVFDSSESSEDEQSTSDKTNQNRNKKFIFISPYERYKRVIPVVAE
QEEKDRQKQEKEEEERLNEMRNKDEPSISVPDEITLSDQSPKLKKKKMCIPLKEMPNRKR
KKNLSIKDTSEEWSNSNMFTPIPSLNKKIKQDVRREFNTTKDTKNEENKQIIVQTVPSND
IIKPLRERKKGDKKMNEKELIQKGMLPVETFDYKSVDFNNVFQGGSTTNDTRRTNFVQPK
QRKKRLMIACENIGSKRLSISIMFNIMMLLYIILTITLNNVLFVNCNFLYNKINSSNERL
FNYTYTLVNKTHADLIDFASSNEQVDCLGLGIIFANTLSWFFADKANGTNALDVRFLLSS
RNQPNRVQVYIGTQFGLEWTDFKIERRTIVIVHGFLSHSDEEWIAEMEKAFLQWNDVNVV
IVDWSAGGNTWNYYKAAVNTKIVGYQISKFLEHIINATTVASNWGTIHLVGHSLGAHICG
FAAKEFKKRQSNWIIHRITGLDPAQPCFKNTCSSIHLDKMDAPFVDIIHTNGKLLSNLGL
GLPEPIGHVDFYPNGGKSQPGCIESNKTYFGYLPIPHIYIQQAICNHGRSYIYLIESLLL
TSTNDCSFRAHYWDLTYKNIEKIISEPCNEDICIEMGIKAENYPHRGTFFLFTNKSSPYC
VNETELPEEVKKQLKIDYNDELHD
NT seq
3855 nt
NT seq
+upstream
nt +downstream
nt
atggagcctaaggaaaattgggatgaggataatgaaatacttgttgaaaatgaaaagaaa
agcgaagaaattattccaggattcgcttcgttcgatgattatcttaaggaagcatttagt
gttataaaagatgggatcaaagcatctaataattttcccatcgaagagaattataattat
tatgaatgttttccaagtttcaataaagtaaaaaatgacgattcggaaagactattaaag
atgatgcaaaaaataattaatttatcaggggtaggtggcaacataggaagacgcgatatc
gaagaacaatttgatcttttattggaaacgaatgatgtgtatttagataaagcaggttta
tgtatggatgaagaaagtggtattgtaaaaaatcctgaaatagaattagttgtatcgcaa
actaggaaggatattacagccggtagttggaatatatcatctacgattaagaaacaatca
tcggatgcatctaccaaagcacaagctgtgcgtttattgactgcacgaaatatacaaaga
ccacaattaactttcaaagacaaaattgataatagtctaaaaccttgggaacctaaaatc
aaatataaaccaaattctttaaagcctttagctatttatttagaagagaccgaagatgga
gaggtattttgtcatccttatgattttgaattaaataaatttcaagctccagaaaatcaa
ttacaaaaaagagaacctgttaagtataaagaattgcatgaaaccccgttgattatggta
aacaagccggaagacatcaaaatgttattagatgatttaaagaaatataaagagattgct
gttgatttggaacatcattcttacagaagtttccaaggtataacttgtttgatgcaaata
tcaactgtagatacagattatataattgatacattggtattaagatcagaattacatgaa
ctcaatgagatttttaccaaacctactattctaaaagtgtttcacggagcggactttgat
attcagtggcttcaaagggatttgtccatatatgtagtaaacatgtttgatactcatcaa
gctgctaaacaacttaatttaccatatttaagtttagcttatcttttaaaaaaattttgt
aatgtagatccaaacaaacactttcaacttgctgattggcgtataagacctttacctgat
gaacttttaaaatatgcaagagaagatacgcactatttattgcatataaaagatgttttg
agaaatgcattaattgattcttcaaatgggaagactaacattttaaaggctgtatatgat
agaagtacagagttatgtaagataacttacataaaaccgatatggacagaagaaagttat
atggatatgtatagaaaaagtcaaaaaatatttaacaataagcaaatttatgctttaaag
gaattacataagtggagagacatgacagctagagaggaagatgatagcactggttacgtt
ttaccaaatcatatgcttctaaatatagctgagacattaccacgtgagatgcagggtatc
ttggcttgttgcaatccaatcccacctttgcttcggcaaaacctattaaaacttcataaa
attatactcaaagcacgagatcaacctctcataaaaccagtggaagaaacagatgttaga
ccacgatttgctcaaagaaatcatgcggtaaactcagatgcttggacatactctcctcat
gacataccaagcgatgcagaagctagagccgatttaccttgtctcttagatcaatgcaaa
ataacagaaaaatcatatagcaatattaatttaaaacataccattacagtattcgatagt
tcagaatcatctgaggatgaacaatcgacttctgataagactaatcaaaatagaaacaaa
aaattcatattcattagtccctatgaaagatacaaacgtgtaatacctgtagtagctgaa
caagaagaaaaagatagacaaaaacaagaaaaagaagaggaagaaagattaaatgaaatg
aggaacaaagatgaaccttcgatatctgttcctgatgaaataactttatcagatcaaagt
ccaaaacttaaaaaaaagaaaatgtgtattcctttaaaagaaatgcctaatagaaaaaga
aagaaaaatctgtctataaaagatacatccgaagaatggtctaatagtaatatgtttacg
ccaattccttccttgaataaaaagataaagcaggatgtaaggagagaatttaatacgacc
aaagacacaaagaatgaagaaaataaacaaataattgtacaaactgttccttctaatgat
attatcaaacctctgagagaacgtaagaaaggagataaaaagatgaatgaaaaggaatta
atacagaaaggaatgcttcctgtagaaacgtttgattataaatctgttgattttaataac
gttttccaaggtggtagtaccacaaatgacacacgtcggacgaactttgtgcagcctaaa
caacgtaagaagagattaatgatagcttgtgaaaatataggaagcaaaaggttatctatt
tcaataatgttcaatatcatgatgttattgtatataatattaacgattacgttaaataat
gttttatttgtgaattgcaactttttgtacaacaaaattaattcgtcaaatgaaagattg
ttcaattatacttatacattggtaaacaaaactcatgctgatttaatagattttgcttct
agtaacgaacaagtagattgtcttggtttaggaataatttttgcgaacaccttatcatgg
ttttttgctgataaagctaatggaacaaatgcattagatgttagatttcttttatcatcg
agaaatcaaccaaacagagtacaagtatatattggcacacagtttggtctagaatggaca
gattttaaaattgaacgtagaactattgtaatagtacatggatttttatctcacagtgat
gaagaatggattgccgaaatggagaaagcatttctccaatggaacgacgttaatgtagta
attgttgattggagcgccggaggtaatacgtggaattattataaagctgccgtcaatact
aaaatagttggatatcaaatttcaaaatttttagaacatattataaatgcaacaacagtt
gcatcgaattggggtactatacatttagttggtcatagtcttggagcacacatttgtggc
tttgctgcaaaagaatttaagaagagacaaagtaattggatcatacatagaattactggt
ctagatccagcgcagccatgtttcaaaaatacatgttcttctattcatttagataaaatg
gatgcaccatttgtcgacataatacatactaatggaaaattactctccaatctaggttta
ggtttaccagagcctattggtcatgtagatttctatcctaatggtggaaaaagtcagcca
ggttgtattgaatcaaacaaaacatattttggctatttacctattccacatatatatatt
cagcaagcaatatgcaatcatggtcgctcttatatatatctcatcgaatctttgctatta
acttctacgaacgattgtagtttcagggcacattattgggacttgacatataaaaatata
gaaaaaataatatctgaaccatgtaacgaggatatttgcattgaaatgggtattaaagca
gagaattatcctcatcgtgggacattttttctatttactaataaaagttcaccatattgc
gtaaatgaaacagaattaccagaagaagtgaagaaacaattgaagatcgactacaatgat
gagcttcacgattaa
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integrated database retrieval system
