Polistes canadensis: 106791478
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Entry
106791478 CDS
T05611
Name
(RefSeq) collagen alpha-1(IV) chain
KO
K06237
collagen type IV alpha
Organism
pcf
Polistes canadensis
Pathway
pcf04382
Cornified envelope formation
pcf04512
ECM-receptor interaction
pcf04518
Integrin signaling
pcf04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pcf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
106791478
04518 Integrin signaling
106791478
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
106791478
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
106791478
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pcf04147
]
106791478
00536 Glycosaminoglycan binding proteins [BR:
pcf00536
]
106791478
Exosome [BR:
pcf04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
106791478
Glycosaminoglycan binding proteins [BR:
pcf00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
106791478
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
DUF2897
Motif
Other DBs
NCBI-GeneID:
106791478
NCBI-ProteinID:
XP_014612610
LinkDB
All DBs
Position
Unknown
AA seq
1823 aa
AA seq
DB search
MRPLAANLDGPSPNILRIAWVLLIIVLGFIPSNEAVICRDTYKCNCTGVKGQSGYPGIPG
QLGLEGLPGEVGPDGPPGPKGEKGAGGEYGGTGEKGYRGEPGIRGFTGSPGLSGNTGVPG
VMGPDGIDGCNGTDGRAGPPGMSGVYGERGPEGDIGDYGPPGEPGEGGINSVGVKGVQGD
SGIDGPQGYPGSYGVPGDMGYPGETGDFGYPGGPGLPGMEGDRGETVYGVRGVPGEQGDR
GEAGSSNEQYIRGKGTSPVKGSKGVKGQRGDFGYRGRKGEVGAKGPLGRPGFAGTKGFKG
EQGDDGPRGKQGYEGPAGPAGSKGEKGAPGYAGNPGSDGSDGESGEIGNQGPPGRQGAAG
EPGTYIPELDEIIAGSIGIQGDLGPPGEPGESGTPGLPGKVGYIGPPGPPGPAGRPGEPG
RKGSSIKGEQGDDGIPGPIGQQGPPGLPGAPGLIGAKGFPGVTVIGPPGPDGKYGLPGLT
GPPGDRGDPGPPGDKGFPGKGVQVRGPPGEHGLPGSPGLPGPDGWPGRPGLKGVKGYRGD
DCGICTPGLPGEKGERGDSGVSGYSGTPGFPGLPGPRGFKGIQGKTGPVGLAGLEGDSGR
PGIAGPQGPKGQAGKVYLPPEEKYVSPPGDIGDKGFPGLEGPMGPWGKIGLIGDTGAPGP
KGEKGDHGAPGLIGRNGTDGWDGIPGEKGEPASVPIEFLRGDPGYDGAPGTKGTAGELGK
KGEPGDSTQFSVKAQGDKGYKGERGAPGEPGYKGYQGQTGDEGFPGLSGPMGSPGLSLQG
PIGLKGYPGMPGLQGPRGTAGSPGLQGPEGFPGRVGSKGDRGDPGTNLLYGEIGEPGWYG
SKGEIGDAGPQGFPGRPGVDGLKGMKGAKGAPGFEGLPGLQGAKGQRGYSIQGERGFPGI
PGQPGMSGRIGDVGARGPDGPSGFDGMKGLKGEIGFMGRRGDDGDMGPQGFQGLDGSVGL
PGRPGLEGDVGEIGESGPTGWPGNEGFDGAPGPKGEKGDIGITGNPGYLGQMGLKGIQGD
FGPDGIPGLPGDNSFSGPQGDMGDPGFTGEIGPVGRAGFDGRPGLPGEPGLATDGLNGLT
GEKGEPGFDGYEGPPGPKGEIGDMGPDGFKGERGDQGFQGQPGYAGIPGRYGAKGQRGPA
GLPGFDGPDGKPGPDGDPGLMGRPGMPGDDGLPGYPGIMGAPGAKGPVGEPGMASYAVAE
TGDRGNPGLNGFQGQKGESGDQGYLGIPGQKGQQGDIGYPGQHGFSGFPGLKGIIGDEGP
RGLPGRTETFAEQGEQGRAGLDGMPGIPGRPGQKGAPGEYGFNGPKGIRGDVGYSVRGPK
GIIGDQGPTGYVGFPGMPGDEGLPGIPGIPGPKGYVGEPGESASSAKGAKGEPGWPGLDG
RLGPKGARGNSGLPGFQGLPGPKGETGDSGEPGLAGLPGPPGPQGPKGDRGINPFSNFNR
RGLPGDMGPVGLPGFPGPRGPIGDPGPDGFPGREGELGMIGLPGPQGPEGNKGPAGYPGS
PGTVGRQGLPGNAGFPGIPAPPSPGPKNRGFHFARHSQSVMIPLCPKNTVKLWDGFSLLH
IMGNGRAYAQDLGSAGSCLRKFSTMPFTFCNMNDVCSYANRNDYSYWLSTPEPMPMMMTP
IPAPQIGRYISRCSVCEAPTRVIALHSQSMNIPECPGGWEEIWIGYSFYMHRDAGADGGG
QSLISPGSCLEEFRFRPFIECRGMGTCNFFTTATSYWLATIEDYAMFRKPLQQTMKADHT
SKISRCTVCLKRRITEDRPVQPEVGNIYRRPTNYPQSRYSPNYPRQRTSAGRNNNYNVPR
VPYHFRRGGRFRKTKRTTTEAPT
NT seq
5472 nt
NT seq
+upstream
nt +downstream
nt
atgcggcccttggccgccaatttggatgggcctagccctaacatcctacgaatcgcctgg
gtccttcttattatcgtccttgggtttataccttcgaacgaagctgtgatatgccgggat
acctacaagtgcaattgtaccggtgtgaaagggcaatctggttatcctggaatacctgga
caactagggttagagggacttcccggtgaagtcggaccggatgggccaccaggacctaaa
ggtgaaaaaggtgcaggcggtgaatatggtggtaccggagaaaaaggctatagaggcgag
cctggaatacgaggattcaccggatctcctggactttcgggtaacacaggagtccctgga
gttatgggaccggatggtattgacggatgcaacggtacagacggtcgagccggtccacca
ggtatgtctggagtttatggtgaacgaggaccggaaggagatataggagattatggtcca
cctggtgaacctggtgaaggtggaatcaattcggtaggcgtgaagggagttcagggtgat
tctggtatcgatggacctcagggttatccaggatcgtacggagttccaggagatatgggt
tatccaggagaaactggcgactttggttatccaggtggtccaggtctaccaggtatggaa
ggtgatcgaggagaaaccgtttatggtgtaagaggagtacctggtgaacaaggtgacaga
ggtgaagctggttcgagtaatgaacaatatataagaggtaaaggtactagtccggttaaa
ggatctaaaggtgtgaaaggacaaagaggagattttggataccgtggacgaaaaggagaa
gtaggagcaaagggaccactgggtcgaccaggtttcgctggaacgaaaggtttcaagggt
gaacaaggggacgacggtccaagaggaaaacaaggttacgaaggaccagctggacctgcc
ggaagtaagggagaaaagggtgcaccgggttacgcaggaaatcctggatcggacggttcc
gatggtgaatccggagaaatcggtaatcaaggtcctccgggaaggcaaggagctgccggc
gaaccaggaacgtatataccagaactcgacgaaataattgctggaagtattggaattcaa
ggagatctcggaccacctggtgagccaggtgaatcaggaactcctggacttcctggaaaa
gttggatacattggtcctccaggaccaccaggacctgctggacgaccaggtgaaccagga
cggaaaggttcttctatcaaaggagaacaaggagacgatggcattcctggaccaatcgga
caacaaggaccacccggtcttcctggtgcgcctggacttatcggtgcaaaaggatttcca
ggtgtcacagtaataggtccaccaggtcccgatggcaaatacggattaccaggactaact
ggtccacctggagatcgtggagatcctggaccacctggagacaaaggttttcctggaaaa
ggagttcaagtaagaggaccacctggagagcatggtttaccaggatctccaggattgcct
ggtccagatggatggccaggcagacctggtctaaaaggagttaagggctaccgcggggat
gattgtggcatttgtacgccaggattacctggtgaaaagggtgaacgtggtgattctggt
gtgagcggatactcgggaactcctggatttcctggattgcctggaccgcggggattcaag
ggaatacaaggtaaaactggtccagtaggactagcgggattggaaggagacagtggaagg
ccaggtattgcaggaccccaaggtcctaaaggacaggcaggaaaggtctacttaccaccg
gaagaaaagtacgtgagcccacctggggatatcggtgataaaggattccctggattagaa
ggtcctatgggaccgtggggtaaaattggcctaatcggagataccggagcacctggaccg
aaaggagaaaaaggcgatcacggcgctcccggcttgattggtcgtaatggaacagatgga
tgggatggtataccaggtgaaaaaggtgaaccagcatcggtaccaatcgaatttttacgt
ggcgatccaggatatgacggtgcgccaggtacaaaaggtactgctggagaattaggaaag
aagggagaaccaggtgattctacacaattttcggtcaaggcacagggagataaaggatat
aaaggcgaaagaggtgcacctggcgaacctggttataaaggttatcaaggacaaaccggt
gacgaaggtttccctggtttgtcaggacctatgggatctcctggtttatcgcttcaagga
ccaataggtttgaaaggatatccaggaatgccaggattgcaaggacctcgtggcactgct
ggttctcctggacttcaaggaccagaaggttttccaggtcgtgttggtagtaaaggagat
cgtggtgatcctggcacaaatcttctttacggtgaaataggtgaacccggttggtacgga
agtaaaggtgaaattggagatgctggaccacaaggtttccctggcagaccaggagtagat
ggacttaaaggtatgaaaggagccaaaggagctcctggtttcgagggcttgccaggtctt
cagggagctaaaggccaacgaggatacagtatacagggtgaaagaggttttccaggaata
ccagggcaaccaggaatgtctggaagaataggtgatgtaggagctcgtggaccagatggc
ccgtcaggattcgacggcatgaaaggattaaaaggagaaattggtttcatgggaagacgt
ggcgatgatggtgacatgggtcctcaaggtttccaaggtttagatggaagtgtaggttta
cctggacgtccaggtttggaaggtgacgtcggtgagattggtgaatccggaccaactggt
tggcctggtaacgaaggattcgacggtgcacctggtccgaaaggagaaaaaggagatata
ggtatcactggtaatccaggttaccttggccaaatgggtcttaagggtattcagggtgat
tttggaccggacggtatacctggtctaccgggcgacaattccttcagtggaccacagggt
gatatgggagaccctggtttcactggagaaattggacccgtcggacgcgctggatttgat
ggtcgacctggtttacctggagaacctggcttagctacggacggattaaatggtttaacc
ggagaaaaaggagaaccaggattcgatggatatgagggaccacctggccctaaaggagag
attggtgatatgggaccggacggatttaaaggagaaagaggagatcaaggtttccagggt
caaccaggctatgctggaattccaggtagatacggagctaaaggtcaacgtggtccagcg
ggattacctggtttcgacggaccagatggaaaaccaggtcccgatggtgaccccggttta
atgggtcgtccaggtatgccgggagacgatgggttaccaggttacccaggtattatgggt
gcaccaggtgccaaaggtccagtaggagaacctggaatggcatcatatgcagttgcagaa
acaggtgatcgaggaaacccgggattaaatggctttcaaggacagaaaggagaatcaggt
gatcaaggatatcttggaataccgggtcaaaaaggtcaacaaggtgatataggatatcca
ggacaacatggtttctcaggtttcccagggctaaaaggaataataggagatgaaggtcct
cgtggtcttcccggtcgaaccgagacatttgccgagcagggtgaacaaggacgagctggt
ctcgatggaatgcctggaattcctggtcgaccagggcaaaaaggtgctcctggagaatac
ggatttaatggccctaagggaattcgtggagatgttggatattcggttcggggacctaaa
ggaataataggagatcaaggtccgacaggatatgtaggtttccctggtatgcccggtgac
gaaggattgcctggcataccaggcatacctggtcccaaaggttatgtcggtgaaccaggt
gaatccgctagtagtgcaaaaggtgcaaaaggtgaaccaggttggccaggactggacggt
cgactcggtccaaaaggagcaagaggtaactcaggtttacctggtttccaaggtttacct
gggcctaaaggagaaacaggagatagcggggaaccaggattagcaggattgcctggccct
ccaggaccacagggtccgaaaggagatcggggtataaatccattttcgaattttaatcga
cgtggacttcctggagatatgggacctgtaggattgccaggatttcctggacctcgaggt
ccaataggggatcctggtccagacggatttcctggtcgagaaggagaacttggtatgatc
ggcttacctggaccacaaggacctgaaggtaacaaaggtcctgctggttatcctggctca
cctggcacggttggtagacaaggtctccccggaaatgctggcttccctggcataccagca
ccaccatcacccggtcccaaaaacagaggattccatttcgctagacactcgcaatccgtc
atgattccactttgtccaaaaaatacagttaaattatgggatggattctctttactccat
attatgggcaatggacgagcgtacgcacaagatcttggaagtgcaggaagttgtcttaga
aagttttcaacgatgccttttacattctgtaacatgaacgatgtttgctcttatgccaat
cgtaacgattatagttattggctcagtacccccgaacctatgccaatgatgatgacacct
ataccagccccacaaatcggtagatacatatcaagatgttcagtttgtgaggctcccacg
agggtcattgctttacacagtcaatctatgaatataccagagtgtcctggtggttgggaa
gaaatatggatcggttacagtttttacatgcacagagacgctggtgcagacggcggtggt
cagtcattgatctccccaggatcgtgtctagaagaattccgttttagaccatttatcgag
tgtcgtggcatgggtacttgtaatttcttcaccacagcgacttcttactggttggcgact
atcgaagactatgcaatgttccgaaaacctttgcagcaaacaatgaaagcagatcatacg
tcgaaaatcagtcgttgtactgtatgccttaaacgtcgtattaccgaagatcgacctgtc
caaccagaagtaggtaatatttatcgtcgaccaacaaattatccacagtcacgatattcc
ccgaattacccacggcaaagaacgtctgctggtagaaataataattacaatgtaccacgt
gtaccatatcattttcgaagaggaggccgatttcgtaaaaccaaacgaacaacaacagag
gcaccgacatag
DBGET
integrated database retrieval system
