Pseudomonas corrugata: AXG94_07175
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Entry
AXG94_07175 CDS
T04842
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pcg
Pseudomonas corrugata
Pathway
pcg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AXG94_07175
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcg03019
]
AXG94_07175
03009 Ribosome biogenesis [BR:
pcg03009
]
AXG94_07175
Enzymes [BR:
pcg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
AXG94_07175
Messenger RNA biogenesis [BR:
pcg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AXG94_07175
Ribosome biogenesis [BR:
pcg03009
]
Prokaryotic type
rRNA processing factors
AXG94_07175
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
TcdA_TcdB
Motif
Other DBs
NCBI-ProteinID:
AOE61552
LinkDB
All DBs
Position
1751426..1754617
Genome browser
AA seq
1063 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDF
GSERHGFLPLKEISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEERGNKGAALTTFISL
AGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLVAPADMGLIVRTAGLGRSSEEMQW
DLDYLLQLWTAIKEASLDRSAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALT
FIRQVMPQYASKIKLYEDSVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSID
INSARATKGSDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKV
RECLEADRARVQVGRISRFGLLEMSRQRLRPSLGESSGIVCPRCNGTGIIRDVESLSLAI
LRLIEEEALKDRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIVILPNDHLETPHF
EVQRLRDDSPEAHNNQSSYEIAAAAAEVEEVQPAAATRTLVRQEAAVKTAPARANAPVPT
EVVAPAPAPVAAPEPSLFKGLVKSLVSLFATKEEPAAPAVVAKPAATERPARNEERRNGR
QQTRNRNGRRDEERKPREERAPREERAPREPREERQPREAREEVPAVAREERAPRPPREE
RQPRAPREDRKPRGEREERVRELREPLDAAPAAATNAEERPARQPREERAPRPPREERQP
RAEQTAAATSEEEVLNAEEQLQEDGQDNAEGDRPRRRSRGQRRRSNRRERQRDANGNVIE
GSEESESTEAPSTADLAAGLAVTAAVASSTVSAPAEAQANEQAERATAAVEDAPVETPVV
EATTAVRVTASPEVEIAPAPEAQPEAAVEPAPVVEQPAVAAETAVEAAVETDAEEKAPTP
VREEQTAFNWNPEPAAPAPVVEPEPMPEPVKAAEPAVVEPAPVVEAPVVVEAPAPVEEPA
PASALTANGRAPNDPREVRRRKREAERLQKEAEEAAAQASVAEPAPAVEVVEATPAPVTE
TAAEPAPIESAPVTDEAQPSAEAEEVTPHRAPMEKEHEPKPHA
NT seq
3192 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctgattaacgcaactcaacccgaagagttgcgtgttgcactggtagac
ggccagcgcctctacgacctggatatcgaatccggtgcacgcgagcagaagaaggccaac
atctataaaggccggattactcgcatcgaaccaagccttgaggctgcctttgtcgatttc
ggctccgagcgccacggcttcctgcccctcaaagaaatctcccgcgaatacttcaagaaa
gcccctgaaggccgcgtcaacatcaaggacgtcctgagcgaaggccaggaagtcatcgtc
caggtcgaaaaagaagaacgtggcaacaagggcgctgccctgaccaccttcatcagcctg
gccggccgttacctggtcctgatgccgaacaacccgcgtgccggcggcatctcccgccgc
atcgaaggcgaagagcgcaacgaactgcgtgaagccctcaacggcctggttgccccggcc
gacatgggcctgatcgtgcgcactgccggccttggccgcagcagcgaagaaatgcaatgg
gacctcgactacctgctgcagctgtggacggccatcaaggaagcctcgctggatcgctcc
gcgccgttcctgatctaccaggaaagcaacgtcatcatccgcgccatccgcgattacctg
cgccaggacatcggcgaagtgctgatcgacagcgttgaagcccaggacgaagccctgacc
ttcatccgccaggtgatgccgcagtacgccagcaagatcaagctctatgaagatagcgtt
ccgctgttcaaccgtttccagatcgaaagccagatcgagaccgctttccagcgcgtcgtc
gagctgccgtccggcggttccatcgtcatcgatccgaccgaagccctggtgtccatcgac
atcaactcggcgcgcgccaccaaaggcagcgacatcgaagaaaccgccctgcagaccaac
cttgaagcggccgaagaaatcgcccgtcagttgcgcctgcgcgacatcggcggcctgatc
gtcatcgacttcatcgacatgaccccggccaagaaccagcgcgccgtggaagaaaaggtc
cgtgagtgcctggaagccgaccgcgcccgtgtacaggtcggtcgcatctcgcgcttcggc
ctgctggaaatgtcccgtcagcgtctgcgtccgtccctgggcgaaagcagcggcatcgtc
tgcccacgctgcaacggcaccggcatcatccgtgacgtcgagtcgctgtccctggcgatc
ctgcgcctgatcgaagaagaagccttgaaagaccgcaccgccgaagtccgcgcccaggtg
ccgatcccggtggcagcgttcctgctcaacgaaaagcgcaactcgatcaccaagatcgag
ctgcgcacccgggcccgaatcgtcatcctgccgaacgatcacctcgagacgccgcatttc
gaagtccagcgcctgcgcgacgacagcccggaagcccacaacaaccagtccagctacgag
atcgccgctgccgcagccgaagtggaagaagtccagccggctgccgccacccgcaccctg
gtccgccaggaagccgctgtgaagactgcccctgcccgcgccaatgctccggttccgacc
gaagtcgtcgcaccggcaccggctccggttgctgcacctgagccaagcctgttcaagggc
ctggtgaagtctctggtcagcctgttcgcgaccaaggaagagcctgccgcaccagccgtg
gttgccaagcctgccgccaccgagcgtcctgcccgcaacgaagaacgccgtaacggtcgc
cagcagacccgcaaccgcaacggtcgtcgtgacgaagagcgcaaaccacgcgaagaacgt
gcaccgcgtgaagagcgtgcaccacgtgagcctcgtgaagagcgccagcctcgcgaagcc
cgtgaggaagtgccggccgtagcccgcgaagaacgcgctccacgcccgccgcgtgaagag
cgtcaaccgcgggctccacgtgaggatcgcaagccacgtggcgagcgtgaagaacgtgtt
cgcgaactgcgcgagcccctggatgccgccccggccgctgccaccaacgctgaagagcgt
ccggctcgccagcctcgcgaagagcgcgcaccacgccctccgcgtgaagagcgtcaacca
cgcgccgagcagaccgccgccgctaccagcgaagaggaagtgctgaacgccgaagagcaa
ctgcaggaagacggccaggataacgccgaaggtgatcgtccacgccgccgctcccgtggc
cagcgtcgtcgcagcaaccgtcgtgagcgtcagcgtgatgccaacggtaatgtgatcgaa
ggctcggaagagtccgaatccaccgaagcgccaagcacagcagacctggccgccggcctg
gcagtgaccgcggcagttgccagcagcacggtcagcgctccagccgaagcccaggccaac
gaacaggccgaacgcgctaccgctgcggtagaagatgcgccggttgaaacgccggtggtc
gaagctactaccgctgtgcgagtgacggcctcgccagaagtggaaattgcaccagctcct
gaagcccagcctgaagctgccgtcgagcctgcaccggtcgtcgaacagccggcggtggca
gcagaaactgccgttgaagctgctgttgaaacggacgccgaggaaaaagcaccgacacct
gtacgcgaagagcagaccgcgttcaactggaacccggaacctgccgcaccggcaccggtg
gtcgagccagagccgatgccagagcctgtcaaggcagccgagcctgcagtggtcgagcca
gcgccagtggttgaagccccggtggttgtcgaagcaccggcccccgtcgaggagcctgct
cccgccagcgccttgaccgcgaacggtcgcgctccaaacgacccgcgtgaagtgcgtcgt
cgcaagcgtgaagccgagcgcctgcagaaggaagccgaagaggctgccgcccaggcgtcc
gttgccgagccggcccccgcagtggaagtagtcgaggcaactccagccccggtgactgaa
accgcagccgaaccagctccgatcgaatcggcgccggtgaccgacgaagctcagccttcc
gctgaagctgaggaagtcacacctcatcgcgccccaatggaaaaagagcacgagcccaag
cctcacgcctga
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