Pseudomonas corrugata: AXG94_13405
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Entry
AXG94_13405 CDS
T04842
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pcg
Pseudomonas corrugata
Pathway
pcg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AXG94_13405
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcg03019
]
AXG94_13405
Enzymes [BR:
pcg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AXG94_13405
Messenger RNA biogenesis [BR:
pcg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AXG94_13405
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
Cas3-like_C_2
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
AOE62712
LinkDB
All DBs
Position
3109757..3111610
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AA seq
617 aa
AA seq
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MSFASLGLSEALVGAIEAAGYTEPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL
ERLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKIYARDLKFVSACIFGGVGMN
PQVQAMARGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR
LPAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRVXRLPASHKRSLL
AHLITTGAWEQVLVFTRTKHGANRLAEYLDKHGLPAVAIHGNKSQNARTKALADFKAGEV
RILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKL
LKSIERMTRQKIPDGDLMGFDASTIEAEKPEVRERPDVRNPRNPRGPRGDGPNGGGGGRK
DKGKDKGKEKPAGSSRGERPAREQKPREGTPAREQQRPAPRAAADRAPDEFLDDDIDNFG
NRVDYVPQQKPAQGRGRRPGAPAQGAGAGAPRSGQSQGRQNGPRNSNGSSTGTPPAKRNG
PRNGGPRDGQARREDARRRPARDDQASQEPAVQTPRGNQPKIMHKESKLDRFPTPEQLDQ
LPSRPRGEKPALLTRNR
NT seq
1854 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttgcttccctcggtctctccgaggctttagtcggcgccatcgaagccgccggc
tacaccgagcctaccccggtgcaacagcgggccatccccgccgtgttgcaaggtcgcgac
ctgatggtcgccgcgcagacaggtactggtaaaaccggcggtttcgccctcccgatcctg
gagcggctgttccccaacggtcacccggacaaatcccagcgtcacggcccgcgccaaccg
cgcgtactggtcttgaccccgacccgggaactggctgcccaggtccacgagagcttcaag
atctacgcccgtgacctgaaattcgtcagtgcctgcattttcggcggcgtcggcatgaat
ccccaggtccaggccatggcgcgcggcgtcgacgtgctggtggcctgccccggccgcctg
ctggatctggccggtcagggcagcgtcgatctgtcccacgttgaaatcctcgtgctggac
gaagccgaccgcatgctcgacatgggctttgtccatgacgtgaagaaagtcctcgcccgc
ctgcccgccaagcgtcagaacctgctgttttcggcaacgttctccaaagacatcactgat
ctggccggcaagctgctgcacaacccggaacgcatcgaagtaacgccgccgaacaccacg
gtcgagcgtatcgaacagcgcgtattncgcctgccagccagtcataaacgcagcctgctg
gcgcacctgatcaccaccggtgcctgggaacaggtcctggtgttcacccgcaccaagcac
ggtgccaaccgcctggccgagtatctggacaagcatggcctgccggccgtggcgatccac
ggcaacaagagccagaacgctcgcactaaggccttggccgacttcaaggccggcgaagta
cggatcctggttgccactgacattgccgcccgcggcctggacatcgaccagttgccccac
gtggtcaacttcgagctgccgaacgtcgacgaagactacgtgcaccggatcggtcgtacc
ggtcgggccggtcgttcgggcgaggcgatctcgctggtcgctccggacgaagaaaagctg
ctcaagagcatcgagcgcatgacccggcagaagattcccgatggtgatctgatgggcttt
gatgccagcaccatcgaggccgagaaacctgaagtgcgtgaacgtccggacgtacgcaac
ccgcgcaacccacgtggcccacgcggtgacggtccgaatggcggcggtggcggtcgcaag
gacaagggtaaggataaaggcaaggaaaaaccggccggcagcagtcgtggcgaacgcccg
gcgcgcgagcaaaagccccgcgaaggcaccccagcccgtgaacaacagcgcccagcccct
cgtgccgccgctgatcgcgccccggacgagttcctggacgacgatatcgataacttcggt
aaccgcgtcgactacgtaccgcagcagaaaccggcccagggtcgtggtcgccgtccgggg
gctccggcacagggtgctggcgcaggcgcgccacgcagcggccaatcgcaggggcgccag
aacggtccgcgcaacagcaacggctcgtccactggtaccccgccagccaagcgcaacggc
cctcgcaacggcggccctcgtgatggtcaggcgcgccgcgaagatgcccgccgtcgcccg
gcccgcgatgaccaggcgagccaggaacctgcagtgcagacccctcgtggcaaccagccg
aaaatcatgcacaaggaatcgaaacttgatcgcttcccgacgcctgagcaactggaccaa
ctgccaagccgcccacggggtgagaaacctgcgttgctgactcgcaatcgctga
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