Pseudomonas corrugata: AXG94_17970
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Entry
AXG94_17970 CDS
T04842
Name
(GenBank) exoribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
pcg
Pseudomonas corrugata
Pathway
pcg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AXG94_17970
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcg03019
]
AXG94_17970
03016 Transfer RNA biogenesis [BR:
pcg03016
]
AXG94_17970
Enzymes [BR:
pcg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
AXG94_17970
Messenger RNA biogenesis [BR:
pcg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AXG94_17970
Transfer RNA biogenesis [BR:
pcg03016
]
Prokaryotic type
tRNA degradation factors
AXG94_17970
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
OB_Dis3
TRAM_2
SRP-alpha_N
Motif
Other DBs
NCBI-ProteinID:
AOE63566
UniProt:
A0A3M3F185
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All DBs
Position
4150530..4153148
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AA seq
872 aa
AA seq
DB search
MADWQSLDPEAAREAEKYENPIPSRELILAHLADRGSPASREELVEEFGLTTEDQLEALR
RRLRAMERDAQLIYTRRGTYAPVDKLDLILGRIAGHRDGFGFLIPDDGSDDLFMSPAQMR
LVFDGDRALARVSGLDRRGRREGVIVEVVSRAHESIVGRYFEEGGIGFVVADNPKIQQEV
LVTPGRNANARVGQFVEVKITHWPTPRFQPQGDVVEVVGNYMAPGMEIDVALRTYDIPHV
WPEAVLKEAAKLKPEVEEKDKEKRIDLRHLPFVTIDGEDARDFDDAVYCEARPGKLRLFS
GGWKLYVAIADVSSYVKLGSALDAEAQVRGNSVYFPERVVPMLPEQLSNGLCSLNPHVDR
LAMVCEMTISKTGEMTDYCFYEAVIHSHARLTYNKVSAMLETPKLAESRKLRGEYNEVLP
DLKQLYALYKVLLGARHVRGAIDFETQETRIVFGSERKIAEIRPTVRNDAHKLIEECMLA
ANVATAEFLKKHEIPALYRVHDGPPPERLEKLRAFLGELGLSLHKGKEGPSPKDYQALLA
NIKDRPDFHLIQTVMLRSLSQAVYSADNQGHFGLNYEAYTHFTSPIRRYPDLLTHRAIRS
VIHSKMNTPHVKRAGAMTIPKARIYPYDEAALEQLGEQCSMSERRADEATRDVVNWLKCE
YMKDRVGESFPGVITAVTGFGLFVELTDIYVEGLVHVTALPGDYYHFDPVHHRLAGERTG
RSFRLGDTVEVRVMRVDLDERKIDFEMSEKTIDAPVGRKKRGTETSAPATKTAAEPASTK
SGRRGPAKEKASDAYRPSDAAAKNAEVRKSREMKQALLAEAKKGGKAASGGKTGRSAPES
ASSKPSKHRKGPSKAGSAPAKSGGARKPKAKS
NT seq
2619 nt
NT seq
+upstream
nt +downstream
nt
atggccgattggcagtccctcgatcccgaggccgctcgtgaagcggaaaaatatgaaaac
cctattcccagccgcgaactgatcctggcgcatctcgccgaccggggttcgcccgccagc
cgtgaagaactggtcgaagagttcgggctgacgaccgaagaccaactcgaagccctgcgc
cgccgcctgcgtgcgatggagcgcgatgctcaactgatctatacccggcgcggaacctat
gcgccggtggacaagctcgacctgatcctgggccgtatcgccggtcaccgtgatggcttc
gggttcctgattcccgatgatggcagcgacgacctgttcatgagcccggcgcagatgcgc
ctggtgttcgacggtgaccgggcgctggcccgtgtgtctggcctggaccgccgcggtcgc
cgtgaaggtgtgatcgttgaggtggtgtcccgtgcccacgaaagcatcgtcggtcgttac
tttgaagagggcggtatcggttttgtggtcgcggacaacccgaagatccagcaggaagtg
ctggttaccccgggccgcaacgccaacgccagggtcggtcaattcgtcgaggtgaagatc
acgcactggccaaccccgcgcttccagccgcaaggcgatgtggtggaagtggtcggcaac
tacatggcgccgggcatggagatcgacgttgccctgcgtacttatgacattccccacgtc
tggcctgaagcagtcctgaaagaagcggccaagctcaagccggaagtcgaagaaaaggac
aaagaaaagcgcatcgacctgcgccacctgccgttcgtcaccatcgacggtgaggatgcg
cgggacttcgacgacgcggtctactgcgaagcccgaccgggcaagctgcgcctgttctcc
ggcggttggaagttgtacgtcgcgattgccgacgtttccagctacgtgaagctcggttcg
gcactggatgccgaagcccaggtgcgcggcaactcggtgtacttccccgaacgcgtcgtg
ccgatgctgcccgagcagttgtccaacggcctgtgctcgctcaatccccatgtcgaccgc
ctggccatggtctgcgagatgaccatctccaagaccggcgagatgactgactactgcttc
tacgaagcggtgatccattcccacgcccgcctgacctacaacaaggtcagtgcgatgctg
gaaacgcctaagctcgccgagtcgcgcaagctgcgcggggagtacaacgaggttctgccg
gatctcaagcagctctatgcgttgtacaaggtgttgctgggcgcgcgtcatgtgcgtggc
gcaatcgatttcgaaacccaggaaacccggatcgtcttcggttccgagcgcaagatcgcc
gaaatccgtccgaccgtgcgcaacgatgcgcacaaattgatcgaggaatgcatgctggcc
gccaacgtggccactgccgaattcctgaagaagcatgaaatccctgcgttatatcgggtc
cacgacggtccgccgccggaacgcctggaaaaactgcgcgccttcctcggggagctcggc
ctgtccctgcacaaaggcaaggaaggtccatcgcccaaggattaccaggcgttgctggcc
aatatcaaggatcgtcctgatttccacctgattcagaccgtgatgctgcgctccttgagc
caggcggtgtacagcgctgacaaccagggccacttcggtctgaattacgaggcctatacc
cacttcacctcgccgatccgtcgctaccccgacctgctcacgcaccgggccatccgcagc
gtcatccattcgaagatgaacactccgcacgtcaagcgtgccggtgcgatgaccattccc
aaggcacgcatttatccgtacgacgaggcagccctggagcagttgggcgagcagtgctcg
atgagcgagcgtcgcgccgacgaagcgactcgcgacgtggtgaactggctcaagtgcgag
tacatgaaggatcgcgtgggtgagtcgttcccaggggtgatcaccgccgtgaccggtttc
ggcctgttcgtcgagctgaccgatatctacgtcgaaggcctggtgcatgtcaccgcgctg
ccgggcgattactaccacttcgaccctgtgcatcaccgtctggcgggcgagcgcaccggg
cgcagtttccgtctgggcgataccgtcgaagtgcgggtgatgcgcgtcgatctcgacgag
cgcaagatcgacttcgagatgtcggaaaaaaccatcgatgcgccggtcgggcgcaagaag
cgtggtaccgagacatctgcacctgcgaccaagaccgctgccgagccggcctcgaccaaa
tccggccgtcgtggcccggccaaggaaaaagccagcgatgcctatcgtccgagcgatgcc
gcggcgaaaaacgccgaagtgcgcaagagtcgcgaaatgaagcaggcgttgctggccgaa
gccaagaaaggtggtaaagccgcgtcgggaggaaagaccggacggtcggctcccgaaagc
gcaagcagtaaaccgagcaaacaccgtaaaggcccgtcgaaagcgggctcggccccggct
aaaagtggcggcgcccgtaaacccaaggccaagtcatga
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