Pseudomonas corrugata: AXG94_22860
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Entry
AXG94_22860 CDS
T04842
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
pcg
Pseudomonas corrugata
Brite
KEGG Orthology (KO) [BR:
pcg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcg03019
]
AXG94_22860
Enzymes [BR:
pcg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
AXG94_22860
Messenger RNA biogenesis [BR:
pcg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
AXG94_22860
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_19
AAA_22
nSTAND3
AAA_25
NACHT
T2SSE
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
AOE64485
LinkDB
All DBs
Position
5208724..5212635
Genome browser
AA seq
1303 aa
AA seq
DB search
MTDQAPAIDKLLKNLDHAMLADRHRLRRQLLELRKKPDEAKLAQWVARMQASCDQVLARK
ASLPLIRYDDNLPIAAKRDEIKEALLKHQVLIIAGETGSGKTTQLPKICLEIGRGQHGLI
GHTQPRRIAARSVASRVAEELATPLGALVGYQVRFEDQSDTNTLIKLMTDGILLAETQND
RYLERYDTIIVDEAHERSLNIDFLLGYLKTLLPRRPDLKVIITSATIDLERFSRHFDDAP
IVEVSGRTFPVETWYRPLTLEQDEEGNRVEDDLTVDQAILATLDEIAAHERSERRSPGDV
LVFLPGEREIRDAAEMLRKAQLKHTEILPLYARLSPAEQQRIFQSHPGRRVVLATNVAET
SLTVPGIRYVIDSGTARISRYSYRAKVQRLPIEAISQASANQRKGRCGRVEPGICVRLYS
EEDFLGRPEFTDPEILRTNLAAVILQMLHLRLGEITDFPFIEPPDGKAISDGFNLLQELS
AVDRNSQLTPLGRQLARLPVDPRMGRMLLEAAKLGSLQEVLIVASAMSIQDPRERPPERQ
QAADQAHAQWKDPDSDFAGLVNLWRGFEEQRQALTASPLRNWCRKNFLNYLRLREWRDAH
RQLSLICRDMQLSLNKDPADYPKLHKAVLSGLLSQIGQKTEDGDYLGARQRRFWVHPSSG
LGKKRPQWLMTAELVETTKLYARMVAKIEPDWIEPLAGHLIKKNHFEPHWEKKRGQVVAY
EQITLFGLIVVGRRPVHYGPVDPVVSRELFIREALVRGEIQSKAKCLAANTRLLEQLDEL
EAKARRRDILADEETLFAFYDARLPAEIHQTATFDSWYRINSQKDPQLLIMREEDVLARE
ASEVTAAHFPDTLRVGDLTLPLSYHFEPNHPRDGVTLRVPAPLLPMLPPERLEWLVPGMI
EAKCIALVRNLPKALRKNFVPVPDFVKAALQRITFAEGSLPQSLGRELLRMTGARVSDEA
WAEAAQQVEGHLRMNLEIVDGQGKFLGEGRDLAELTARFAEASQAALAVPQTAKSQAPVE
AKVFAPVAEKTQQKIAGLSMTVYPALVEEGGVVKEGRFPTPAEAEYQHRRALQRLLMQQL
AESAKFLRSKLPGLTELGLLYRELGRIDNLVEDILLASLDSCVLEGEANLPRDGAALASL
AERKRGGWTEHAERLAKLTLDILKLWHGLQKRFKGKIDLAQAVALNDIKQQLSHLVYPGF
VRETPHQWLKELPRYLKAIEQRFEKLGSQVQKDRVWSGELSNLWAQYQTRAGKHAQEGKR
DPQLELYRWWLEEYRVSLFAQQLGTKVPISDKRLGKQWGQVEP
NT seq
3912 nt
NT seq
+upstream
nt +downstream
nt
atgactgaccaagcccccgctatcgacaaactgctgaagaacctcgaccacgccatgctc
gccgaccgtcaccggttgcggcggcagttgctcgagctgcgcaagaaacccgatgaggcc
aagctggcccagtgggtggcgcgcatgcaggcgtcgtgtgaccaggtgctggcgcgcaag
gccagcctgccgttgattcgctacgacgacaatctgccgattgccgccaagcgtgacgaa
atcaaggaggcgctgctcaagcaccaggtgctgatcattgccggcgaaaccgggtcgggc
aaaaccacgcagttgccgaagatctgcctggaaatcgggcgcggccagcatggcctgatc
ggccacacccagccacgccggattgccgcccgcagcgtggcgagccgggtcgccgaggaa
ctggcgacgccgttgggcgcgctggtgggttatcaggtgcggttcgaagaccagagcgac
accaacaccctgatcaagctgatgaccgacggcatcctgctggccgagacccagaacgac
cgctacctcgagcgctacgacacgatcatcgtcgacgaagcccacgagcgcagcctgaac
atcgattttctgttgggttatctcaagaccctgctgccgcgccgtccggacctgaaagtc
atcatcacctcggcgaccatcgacctggagcgcttctccaggcacttcgatgacgcgccg
atcgtggaagtctcgggccgcaccttcccggtggaaacctggtatcgcccgctgaccctt
gagcaggacgaagagggcaaccgcgtcgaggacgacctgaccgtcgaccaggcgattctc
gccaccctcgatgaaatcgccgcccatgagcgcagcgagcgccgcagccccggcgatgtg
ctggtgttcctgccgggggagcgggagattcgtgacgcggcggaaatgctgcgcaaggcc
cagctcaagcacaccgagatcttgccgttgtatgcgcgcttgtccccggccgaacaacag
cggatcttccagtcccacccgggccgtcgtgtggtgctggcgaccaacgtcgccgaaacc
tcgctcaccgtgccgggcatccgctacgtgatcgatagcggcaccgcgcggatcagccgc
tacagctatcgcgccaaggtccagcgcctgcccatcgaagccatttcccaggccagcgcc
aaccagcgcaaggggcgttgcgggcgggtcgagccggggatttgcgtacggctgtacagc
gaagaagatttcctcggacggccggaatttaccgaccccgagatcctgcgcaccaacctg
gcggcggtgatcctgcagatgctccatctgcgcctgggcgagatcactgatttcccgttc
atcgagccgccggatggcaaggccatcagcgacggtttcaacctgctgcaagaattgtcg
gcagtggaccgcaacagccaactgaccccgttgggccgtcagttggcgcgcttgccggtg
gacccgcgcatggggcgcatgttgctggaagcggcgaagctgggcagcctgcaggaagtg
ctgattgtcgccagcgccatgtcgatccaggatccgcgagagcgtccgcccgaacgtcaa
caggccgccgaccaggcccacgctcaatggaaggatccggactcggactttgccgggctg
gttaatctgtggcgcggttttgaagaacaacgccaggccttgacggccagcccgttgcgc
aactggtgccgcaagaacttcctcaattacttgcgcctgcgcgaatggcgcgacgcccat
cgccagttgagcctgatctgccgcgacatgcagttgagcctcaacaaggacccggccgac
tacccgaaactgcacaaagcggtgctctcgggcctgttgagccagatcggccagaaaacc
gaagacggcgactacctgggcgctcgccaacggcgcttctgggtccacccttcgtcgggg
ctgggcaagaagcgtccgcagtggctgatgaccgccgaactggtggaaaccaccaagctg
tatgcgcgcatggtcgccaagatcgaaccggactggatcgaaccgctggccgggcacctg
atcaagaaaaaccacttcgaaccccattgggagaagaagcgcggacaggtggtggcgtat
gaacagatcaccctgttcgggctgatcgtggtcggccgtcggccggtgcattacgggccg
gtggacccggtggtgtcgcgggagctgttcatccgcgaagccttggtgcgtggcgagatc
cagtccaaggccaagtgcctggcggccaatacccgattgctggagcaactcgacgagctg
gaagccaaggcccggcgccgtgacatcctggcggacgaggaaaccctgttcgcgttctat
gacgcacggttgccggccgagatccaccagaccgcgacgttcgacagttggtaccggatc
aacagccagaaagacccacagttgttgatcatgcgcgaagaggacgtgttggctcgcgag
gccagcgaagtgaccgccgcgcacttccccgacacgttgcgcgtcggcgacctgacgttg
cccctcagctaccacttcgaacccaaccatccccgcgacggcgtgacattgcgggtgccg
gcgccgctgttgccgatgctgccgccggagcgcctggagtggctggtgcccggcatgatc
gaggccaagtgcattgccctggtgcgcaacctgcccaaggccctgcgcaagaacttcgtg
ccggtgccggacttcgtcaaggcggcgctgcaacgcattaccttcgccgaaggttcgttg
ccgcaatccctgggccgcgagctgctgcgcatgaccggcgcgcgggtcagcgacgaagcc
tgggccgaagcggcgcagcaagtggaaggtcacctgcgcatgaacctggaaatcgtcgac
ggccagggcaagttcctcggcgagggtcgcgacctggccgagctgacagcgcgttttgcc
gaagccagccaggctgccttggccgtgccgcaaaccgcgaaaagccaggcgccggtggaa
gccaaagtcttcgctccggtggcggaaaagacccagcagaagatcgccgggttgtcgatg
acggtgtatccggcgttggtggaggagggcggtgtggtcaaggaggggcgtttccctacc
ccggccgaagccgagtaccagcatcgccgcgccttgcaacggttgttgatgcagcagttg
gcggagtcggccaagttcctgcggagcaaattgccggggctgacggaactgggcttgctc
taccgcgaactgggacgcatcgacaacctggtggaagacatcctgctggccagtctcgac
agctgtgtgctggaaggcgaagcgaacctgccccgtgacggcgccgcgctggcgtccctg
gccgagcgcaagcgcggcggctggaccgaacacgccgaacgcctggcgaagctgaccctg
gatatcctcaagctctggcacggcctgcaaaagcgcttcaaaggcaagatcgacctggcc
caggccgtggcgctgaacgacatcaagcaacagctcagtcatctggtgtacccgggcttc
gtgcgcgaaaccccgcatcaatggctcaaggagctgccgcgctacctcaaggcgatcgag
cagcgtttcgagaagctgggcagccaggtgcagaaagaccgggtctggagcggcgaactg
tcgaacctctgggcccagtaccagacccgcgccggcaaacacgcccaggaaggcaagcgc
gatccgcaactggagctttaccgctggtggctggaggaataccgagtgtcgctgttcgcc
cagcagttggggaccaaggtacctatttcggacaagcgcctgggcaagcaatgggggcag
gtggagccctga
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