Pseudomonas corrugata: AXG94_24080
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Entry
AXG94_24080 CDS
T04842
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pcg
Pseudomonas corrugata
Pathway
pcg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AXG94_24080
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcg03019
]
AXG94_24080
03009 Ribosome biogenesis [BR:
pcg03009
]
AXG94_24080
Enzymes [BR:
pcg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AXG94_24080
Messenger RNA biogenesis [BR:
pcg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AXG94_24080
Ribosome biogenesis [BR:
pcg03009
]
Prokaryotic type
rRNA helicases
AXG94_24080
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
BscB_a-b
Motif
Other DBs
NCBI-ProteinID:
AOE64716
UniProt:
A0A7Y5Z7N3
LinkDB
All DBs
Position
5502660..5504333
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AA seq
557 aa
AA seq
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MTQEIGGFAALELHPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAF
ALPILHRIDPSKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLK
AIRNGAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPET
RQTVLFSATLPQSIRAIAERHLKDPKHVKIQSKTQTVTAIEQAHLLVHADQKTSAVLSLL
EVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVV
ATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVI
ERVTGQKVAEVRLPDAQAVLDARIKKLTNSLSPLVADAESTHGDLLDRLTADIGCSPRAL
AAALLRKATNGQALNLAAIEKERPLVPNSAPRGDRPERSGDRPDRGDRERRAPIPLAEGR
ARCRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLEKLLTKLK
DTRVAGKQLKLRRYRED
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggaaatcggcggcttcgccgctcttgaacttcatcccaatattgtcgctgca
gtagtcgctaccggctatgaagagccttcggccattcagcagcagtcgatcccgatcatt
ctcgccggtcacgatatgattggtcaggcgcaaaccggtacgggtaagaccgccgcgttc
gccttgcctatcctgcaccgcattgatccgtccaagcgcgagccgcaagctctgatcctg
gccccaacccgtgagttggcgctgcaagttgcaactgctttcgaaacctacgccaagcaa
atgccgggcgtaactgttgtggctgtctacggcggcgcgccgatgggcccacaattgaaa
gccatccgtaatggcgcacagatcgttgtcgccaccccgggccgtctgtgcgaccacctg
cgtcgcgacgagaaagtcctggccaccgtgaaccacctggttctcgacgaagccgacgaa
atgctcaagctgggcttcatggacgacctggaagtgatcttcaaggccatgccggaaacc
cgtcagaccgtactgttctcggccaccctgccgcagtcgatccgtgcgatcgccgagcgt
cacctgaaggacccgaaacacgtcaagatccagagcaagacccagaccgtcaccgcgatc
gaacaggcccacctgttggttcacgccgaccagaagacatccgctgtcctcagcttgctg
gaagtggaagacttcgacgccctgatcatgttcgtgcgcaccaagcaagcgaccctggac
ctggccagcgccctggaagccaaaggctacaaagccgctgcgctgaacggtgacattgcc
cagaaccagcgtgagcgcgtgatcgactccctcaaggatggccgcctggacatcgttgtg
gcgaccgacgtggctgcccgtggcctggacgttccgcgcatcacccacgtgttcaacgtg
gacatgccgtacgatccggaatcctacgttcaccgtatcggccgtaccggtcgtgctggt
cgcgaaggtcgtgcgctgctgctggtgactccgcgcgagcgccgcatgctgcaggtgatc
gagcgtgtcaccgggcagaaggtggctgaagttcgcctgccggacgcccaggccgttctc
gatgctcgcatcaagaagctgaccaacagcctgtcgccgctggtggctgacgccgaatcg
acccacggtgatctgctcgatcgcctgactgccgacatcggttgcagcccacgcgccctg
gccgccgccctgttgcgcaaggccaccaatggtcaggcactgaacctggctgccatcgag
aaggagcgtcctctggtgccgaacagcgcaccacgtggcgatcgtcccgagcgtagcggg
gaccgtccggaccgtggcgaccgtgagcgtcgtgcaccgatcccgctggccgaaggccgt
gcccgttgccgtaccgcgctgggtgcccgtgacggcatcgccgccaagaacctgctgggc
gcgatcctcaatgagggtggcctggcccgtgaagccatcggtcgcatccaggtgcgtgac
agcttcagcctggtggaattgccggaagatggtctggagaaactgctgaccaagctcaag
gacactcgcgtagccggcaagcaactgaagctgcgtcgttatcgcgaagattga
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