KEGG   Pseudomonas chlororaphis PA23: EY04_00050
Entry
EY04_00050        CDS       T03201                                 
Name
(GenBank) RNA polymerase sigma factor
  KO
K23514  RNA polymerase sigma-19 factor, ECF subfamily
Organism
pch  Pseudomonas chlororaphis PA23
Pathway
pch02020  Two-component system
Brite
KEGG Orthology (KO) [BR:pch00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    EY04_00050
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pch03021]
    EY04_00050
Transcription machinery [BR:pch03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     EY04_00050
SSDB
Motif
Pfam: Sigma70_r2 Sigma70_r4_2 Sigma70_ECF PhyR_sigma-like Sigma70_r4 HTH_29 HTH_23 GerE HTH_24 MPAB_Lcp_cat HTH_40 HD_assoc HTH_11 HTH_Tnp_ISL3 PapC_N
Other DBs
NCBI-ProteinID: AIC17308
LinkDB
Position
complement(10614..11114)
AA seq 166 aa
MSSPEFAVQALYSHHHGWLNTWLRSRLGNAADAADLAQDTFVRLLQRTERLELKAPRAFL
RTIARGLVIDHWRREEIERAYLETIAHLPEAEAPSEEARALVLELLESIARMLEGLKPKV
RKAFLLAQCEGLTHKQIAEQMGLSLRSVERYVADALFHCYLLRYEA
NT seq 501 nt   +upstreamnt  +downstreamnt
atgtcatcacctgagttcgcggtacaggcgctttacagccatcaccatggctggctcaac
acatggttgcgcagccggctgggcaatgccgccgatgcggccgacctggcgcaggacacc
ttcgtgcgcctgttgcagcgtaccgaacgcctcgaactcaaggccccgcgcgcctttctg
cggaccatcgcccgcggcctggtgatcgaccactggcgccgcgaggaaatcgaacgcgcc
tacctggaaaccatcgcccatctgccagaagccgaagcccccagtgaggaagcccgcgcc
ctggtgctggaactgctggagagcattgcgcgcatgctcgaaggcctgaagccgaaggtg
cgcaaggcgttcctgctggcccagtgcgaaggcctgacccacaagcagatcgccgaacag
atggggttgtccctgcgttcggtggagcgttatgtggccgacgcgctgttccactgctac
ctgctgcgctatgaggcgtga

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