Pseudomonas chlororaphis PA23: EY04_00050
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Entry
EY04_00050 CDS
T03201
Name
(GenBank) RNA polymerase sigma factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
pch
Pseudomonas chlororaphis PA23
Pathway
pch02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
pch00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
EY04_00050
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pch03021
]
EY04_00050
Transcription machinery [BR:
pch03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
EY04_00050
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4_2
Sigma70_ECF
PhyR_sigma-like
Sigma70_r4
HTH_29
HTH_23
GerE
HTH_24
MPAB_Lcp_cat
HTH_40
HD_assoc
HTH_11
HTH_Tnp_ISL3
PapC_N
Motif
Other DBs
NCBI-ProteinID:
AIC17308
LinkDB
All DBs
Position
complement(10614..11114)
Genome browser
AA seq
166 aa
AA seq
DB search
MSSPEFAVQALYSHHHGWLNTWLRSRLGNAADAADLAQDTFVRLLQRTERLELKAPRAFL
RTIARGLVIDHWRREEIERAYLETIAHLPEAEAPSEEARALVLELLESIARMLEGLKPKV
RKAFLLAQCEGLTHKQIAEQMGLSLRSVERYVADALFHCYLLRYEA
NT seq
501 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcacctgagttcgcggtacaggcgctttacagccatcaccatggctggctcaac
acatggttgcgcagccggctgggcaatgccgccgatgcggccgacctggcgcaggacacc
ttcgtgcgcctgttgcagcgtaccgaacgcctcgaactcaaggccccgcgcgcctttctg
cggaccatcgcccgcggcctggtgatcgaccactggcgccgcgaggaaatcgaacgcgcc
tacctggaaaccatcgcccatctgccagaagccgaagcccccagtgaggaagcccgcgcc
ctggtgctggaactgctggagagcattgcgcgcatgctcgaaggcctgaagccgaaggtg
cgcaaggcgttcctgctggcccagtgcgaaggcctgacccacaagcagatcgccgaacag
atggggttgtccctgcgttcggtggagcgttatgtggccgacgcgctgttccactgctac
ctgctgcgctatgaggcgtga
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integrated database retrieval system