Pseudomonas chlororaphis PA23: EY04_00875
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Entry
EY04_00875 CDS
T03201
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pch
Pseudomonas chlororaphis PA23
Pathway
pch03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pch00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EY04_00875
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pch03019
]
EY04_00875
03400 DNA repair and recombination proteins [BR:
pch03400
]
EY04_00875
Enzymes [BR:
pch01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
EY04_00875
Messenger RNA biogenesis [BR:
pch03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EY04_00875
DNA repair and recombination proteins [BR:
pch03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
EY04_00875
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RecQ_Zn_bind
ResIII
SNF2-rel_dom
AAA_22
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AIC17467
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All DBs
Position
216539..218473
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AA seq
644 aa
AA seq
DB search
MHDTLEQVFGYPQFRPGQEAAVSAVLAGRSAAAIFPTGSGKSLCYQLPALLLPHLTLVVS
PLLALMQDQLAFLQRHGIAAASIDSAQSRDDANEVMARARSGELKILMISVERLKNERFR
NFLQQVRISLLVVDEAHCISEWGHNFRPDYLKLPDYQRQFNIPQALLLTATATPKVIADM
QAKFAIAEEDVVTTGFYRPNLNLLVEPVRGQDKRRRLVQWMSERPGQPSIVYVTLQKTAE
HIAEHLSRHGIQAQAYHAGLPHEQREAIQRQFMAGQSNCIVATIAFGMGIDKSDIRNVVH
FDLPKSIENYSQEIGRAGRDGQPSDCLVLANRDSLNVLENFVYGDTPELEGIRCVLDELQ
GAAPDGQWEFLLGPLADQSNIRQLPLKTLLVQLELRGLIAPRYAYFAEYRFKFLEEPQVL
LARFEGERREFVAAIIETSSRARTWATVNFDALYQQHQAERNRVVKALDYFQEKGWVELE
SKQMTEVYNLLETSFDAAILSQQLHAYFKQHESSEIARIHAMLALFATEQCLGYRLAQYF
GDDQAPQRCGHCSVCHGQVARLPEPPALPALVDKNFEALCGEFIHRHQQHSGTVPGAERL
TRFLCGISVPLFTKLKARSIQGFAVLEDYPYAEVRDWAEHHLQG
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgcacgacaccctcgaacaggtcttcggttatccacagtttcgtcccggccaggaggcg
gcggtcagcgcggtactggccgggcgctcggcggcagcgatctttcccacgggctccggc
aagtccctgtgctaccagttgccggccttgctgctgccgcacctgaccctggtggtctcg
ccgttgctggcgctgatgcaggaccagctggcgttcctccagcgccacggcatcgccgcg
gcgagcatcgattcggcgcagagccgcgacgacgccaacgaggtcatggcgcgggcgcgc
tccggtgagctgaagatcctgatgatctcggtggagcgcctgaagaacgagcgctttcgc
aacttcctgcagcaggtgcggatctccctgctggtggtggacgaggcgcactgcatctcc
gaatggggccataactttcgccccgactacctcaagctgccggactatcagcgccagttc
aacattccccaggcactgctgctgactgctaccgccacgcccaaggtgatcgccgatatg
caggcgaaattcgccatcgccgaggaggatgtggtgaccaccggtttctatcggcccaac
ctcaacctgctggtggaaccggtgcgcggccaggacaagcgccggcgcctggtgcagtgg
atgagcgagcgtcccgggcagccgagcatcgtctatgtcaccttgcagaaaaccgccgag
cacattgccgagcatctgagtcgccacggcatccaggcccaggcttatcacgccggcctg
ccccatgagcagcgcgaggccatccagcgtcagttcatggcgggccagtccaattgcatc
gtcgccaccatcgctttcggcatgggcatcgacaagagcgacatccgcaacgtggtgcat
ttcgacctgcccaaatccatcgaaaactacagccaggaaatcggccgcgccgggcgtgat
ggccaaccttccgactgcctggtgctggctaaccgcgacagcctcaacgtgctggaaaac
ttcgtctacggcgacacgccggagctggaaggtattcgttgtgtgctggacgagttgcag
ggcgcggcgccggacgggcaatgggagttcctgttggggccgctggcggaccagagcaac
attcgtcagctgccgctcaagaccttgctggtgcagttggagctgcgtgggctgatcgcg
ccgcgttacgcctacttcgccgaataccgcttcaagttcctcgaggaaccgcaggtgctg
ctggcgcgtttcgagggtgagcgccgagagttcgtggcggcgatcatcgagacctccagc
cgtgcccggacctgggccacggtgaatttcgacgcgctgtatcagcaacatcaggccgag
cgtaaccgggtggtgaaggccctggactacttccaggaaaagggctgggtcgagctggaa
agcaagcagatgaccgaggtctacaacctgctggagacgagcttcgatgccgcgatcctg
agccagcagttgcacgcctatttcaagcagcacgaaagcagcgagatcgcgcggatccac
gcgatgctcgcgctgttcgccaccgagcagtgcctggggtatcgcctggcgcagtatttc
ggcgatgaccaggcaccgcagcggtgcgggcattgctcggtgtgtcacggtcaggtggct
cgcttgccggagccgccagccttgcccgcgcttgtggataaaaacttcgaagcgctgtgc
ggtgaatttatccacaggcaccaacagcacagcggcacggttccaggggcggaacggttg
acgcgtttcctgtgcgggatcagcgtgccgctgttcaccaagctcaaggcgcggtcgatc
cagggttttgcggtactcgaggattacccctacgccgaagtgcgcgattgggctgaacat
caccttcagggttga
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