Pseudomonas chlororaphis PA23: EY04_03055
Help
Entry
EY04_03055 CDS
T03201
Name
(GenBank) exodeoxyribonuclease V subunit gamma
KO
K03583
exodeoxyribonuclease V gamma subunit [EC:
3.1.11.5
]
Organism
pch
Pseudomonas chlororaphis PA23
Pathway
pch03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pch00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
EY04_03055
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pch03400
]
EY04_03055
Enzymes [BR:
pch01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
EY04_03055
DNA repair and recombination proteins [BR:
pch03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
EY04_03055
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_V_gamma
RecC_C
Motif
Other DBs
NCBI-ProteinID:
AIC17887
LinkDB
All DBs
Position
713882..717334
Genome browser
AA seq
1150 aa
AA seq
DB search
MPDAMSLSAGFMVVHGNRLDELRSLVVSWMRRYPLAPLENEIALVQSNGIAQWLKLALAE
DPEEDDMGGCGIAAAIDVQLPGSFMWQLYRMVLGRDEIPPKSLLDKAPLTWRLMRLLPEL
INQPHFEPLRRFLTHDTDLRKRYQLAERLADLFDQYQVYRADWLEDWAAGRHQLRSARGE
PKALTPANCWQAELWRALLLDVGEEGMAQSRAGVHQRFIERILNLEKAPQGLPSRVIVFG
ISSLPAQALEALAGLARFSQVLLCVHNPCRHHWADIVADKDLLRHQYKRQARKAGMPAVL
DPQTLHQHAHPLLAAWGKQGRDYINLLDSYDDPNSYRSAFRDGRIDLFSESQPQTLLNQL
QDDILELRPLEETRQLWPAIDLQQDKSIRFHIAHSAQREVEILHDQLLARFSEDPELRPR
DVIVMVPDIDSYAPHIRAVFGQLERDDRRFIPFTLTDQGQRGRDPLLIAVEHLLKLPDSR
FPVSEILDLLDVPALRARFGVDEADLPTLHRWIEGAGIRWGMNAEQRADLGLPEELEQNS
WRFGLRRMLLGYAVGRSDACEGIEPYDEIGGLDAALIGPLVALLDALETAYQNLTLPASP
PQWGERLQALTQQFFLASTEHDDYLLSQLEDLRETWLETCESVGLCDELPLTVVREAWLA
GLDQGRLSQRFLAGAVNFCTLMPMRAIPFKLVCLLGMNDGDYPRAQPPLDFDLMGSDYRP
GDRSRREDDRYLLLEALLSARDQLYVSWVGRSIRDNSERPASVLIGQLRDHLASGWKLAN
DQDDLLHAMTQEHPLQPFSARYFHEGDGLFSYAREWQLLHQTQASPQALEPLAPYVQEEP
LSLGQLQDFLRNPVRHFFSQRLKVFFEAADAPLADEEPFVLDALQRYSLSDSLLEAALNS
ADDPDQALQAQAQRLQASGLLPMAGFGESLQRELIEPLPDLLMRYRQLLELWPTPVTSAL
PITLELNKVKLEGWLSGLHQRSDGGLLSVTTIPNSIGSLKTRKWHRLTRPWVNHLVACAS
GYVLTTALVASDDTLLLPPLDRESALQSLGDLLLAWQAGMCQPLPVAVKTAFAWLGQSDP
GKAEAAARKAYEGDGQTSDGERRESPALARQYPDYNALIADETFSGWVEALYRPLLQAPW
RSAANGEADA
NT seq
3453 nt
NT seq
+upstream
nt +downstream
nt
atgccggacgccatgtccctcagcgctggttttatggtggttcacggtaaccgcctggac
gaattgcgcagcctggtggtcagctggatgcggcgttatcccttggcgcctctggagaat
gagatcgccctggtccagagcaacggcattgcccaatggctgaagctggcactggctgag
gatcccgaggaagacgacatgggcggctgcggcatcgccgccgccatcgacgtgcaactt
cccggcagtttcatgtggcagctctatcgcatggtgctgggacgcgatgaaatcccgccc
aaatccctgctggataaagccccgctgacctggcgcctgatgcgactcttgcccgagctg
atcaatcagccgcacttcgaaccgctacgacgtttcctcactcacgacacggatctgcgc
aagcgctatcaattggccgagcgcctggctgacctgttcgaccaatatcaggtttatcga
gccgactggttggaagactgggccgcaggacggcatcagctgcgcagtgcccgaggcgag
cccaaggccctgacccccgccaattgctggcaggccgaactgtggcgtgcgttgttgctg
gatgtgggggaagagggcatggcacagagtcgcgccggcgttcaccaacgtttcatcgaa
cgtattctcaacctggaaaaggcgccacaagggttgccctcgcgagtgatcgttttcggg
atttcctccctgccggcacaagcccttgaagccctggctggattggcccgcttcagtcag
gttttgctgtgtgtgcacaacccctgtcgtcaccattgggcagatatcgtcgccgacaag
gacctgttgcgccatcaatacaaacgtcaggcgcgcaaggcgggaatgcccgcggtgcta
gacccacagaccctgcatcagcatgcccatccgctgctcgccgcctggggtaaacagggt
cgtgactacatcaacctgctcgacagctacgacgatcccaacagctatcgctcagccttt
cgcgacggccgtatcgacctgttcagcgagagtcagccgcagaccctgctgaaccagctg
caggacgatattctcgaattgcgcccgctggaggagactcgccaattatggccggcgatc
gatctgcaacaggacaagtcgatccgttttcacattgcccacagtgcccagcgcgaagtg
gaaattctccacgaccaactgctcgcgcgcttcagtgaggaccccgaattacgtccgcga
gatgtgatcgtgatggtcccggacatcgacagttacgcgccgcatattcgcgcggtcttc
ggtcagctggagcgtgacgatcggcgtttcattccattcaccctgacagaccagggccag
cgtggccgcgacccattgctgattgccgtggagcatctgctcaagctgccggacagccgt
ttccccgtcagcgaaatcctcgacctgctggatgtcccggcattacgcgcccgctttggt
gtagacgaagccgatctgccgaccttgcatcgctggatcgaaggtgccggcatccgctgg
ggcatgaacgccgaacaacgggccgacctgggactgccggaagaactggagcagaacagc
tggcgtttcggcctgcgccgcatgttgctgggctacgccgtgggacgctccgatgcctgt
gagggaatcgagccttacgatgaaatcggtggcctggacgcggcactgatcgggccgctg
gtggccttgctcgatgcactggagacggcgtatcagaacctcaccttgccggcttcgccg
ccgcagtggggcgagcgcctgcaagccctcacacagcagttcttcctggccagtaccgag
catgacgactacctgctgagccaactcgaagacttgcgcgaaacctggctggaaacctgc
gagtcggtcggcctgtgcgatgagctgccgctgactgtggtccgcgaggcctggctggcc
ggcctggaccaggggcgtttgtcccagcgcttcctggccggtgcggtgaacttctgcacg
ctgatgccgatgcgcgcgattccattcaagctggtatgcctgctggggatgaacgacggc
gactacccgcgggcacaaccgccgctggacttcgacctgatgggcagcgactaccgcccc
ggcgaccgttcgcggcgtgaagacgaccgttacctgttgctggaggcgctgctttcggcg
cgggatcaactgtatgtcagttgggtcggtcgcagcattcgcgacaacagcgaacgcccg
gcttcggtgctgatcggccagttgcgcgatcacctggccagtggctggaagctggcgaat
gaccaggacgacctgctccacgccatgacccaggagcatccgttgcaacctttcagtgcc
cgctatttccatgagggcgatggactgttcagttatgcccgtgagtggcagctgttgcac
cagacccaagcgtctcctcaagcgctcgagcctctggcgccctatgtccaggaagagcct
ttaagcctggggcaattgcaggacttcctgcgcaacccggtgcggcacttcttcagccag
cgcctcaaggtgttcttcgaggcggccgacgcgcccttggccgacgaagagccttttgtg
ctcgacgcgttgcaacgctacagcctgagcgacagcctgctggaggcggcgttgaacagt
gccgatgatccggaccaggccttgcaggcccaggcgcagcggctgcaggccagcggtttg
ctgcccatggccggttttggcgagagcctgcaaagagaactgatcgagcccttgccggat
ctgttgatgcgctatcggcaattgctggagctatggccaacccccgtcaccagcgccttg
ccgattaccctggaactcaataaggtgaaactcgaaggctggttgagcggcctgcaccaa
cgcagcgatggtgggttgctgtcggtcaccactatccccaacagcattggctcactcaag
acccgcaagtggcaccgcttgactcgtccctgggtcaatcacctggtggcctgtgccagt
ggttatgtcttgaccaccgcgctggtggccagcgacgacaccttattgctgccacctctg
gatcgcgaatcggcactgcaaagcctgggcgatctgttgctggcctggcaggcgggcatg
tgccagccgctgccggtagccgtgaaaaccgcttttgcctggctgggccagagcgacccg
ggcaaggccgaagccgcggcgcgcaaagcttatgaaggcgacggccagaccagcgatggc
gagcgtcgggaaagcccggccctggcgcgccagtacccggactacaacgcgttgatcgcc
gatgaaaccttcagcggctgggttgaggcgctgtaccgcccactgttgcaggcgccctgg
cgctccgcggccaatggggaggcagacgcatga
DBGET
integrated database retrieval system
