Pseudomonas chlororaphis PA23: EY04_03595
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Entry
EY04_03595 CDS
T03201
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
pch
Pseudomonas chlororaphis PA23
Pathway
pch03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pch00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EY04_03595
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pch03019
]
EY04_03595
03016 Transfer RNA biogenesis [BR:
pch03016
]
EY04_03595
Enzymes [BR:
pch01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
EY04_03595
Messenger RNA biogenesis [BR:
pch03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
EY04_03595
Transfer RNA biogenesis [BR:
pch03016
]
Prokaryotic type
tRNA degradation factors
EY04_03595
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
S1_RRP5
KH-I_KHDC4-BBP
KH_2
OB_RRP5_4th
S1_2
KH_PNO1_2nd
Motif
Other DBs
NCBI-ProteinID:
AIC17988
LinkDB
All DBs
Position
839886..841991
Genome browser
AA seq
701 aa
AA seq
DB search
MNPVIKKFQFGQSTVTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADPGKGFFPLS
VHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVST
SKKTDPDIAAMIGTSAALAISGIPFDGPIGAARVAFHESTGYLLNPTYEQLQASSLDMVV
AGTEEAVLMVESEAKELTEDQMLGAVLFAHDEFQAVIQAIKELAAEAAKPTWDWAPAPEA
TDLLGAIRSEFGEAISQAYTITVKADRYARLGELKDQVVAKLSGEEGQPSAADVKAAFGE
IEYRTVRENIVNGKPRIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTA
RDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPAAD
VFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAVLT
DILGDEDHLGDMDFKVAGTAKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMNQ
IIGQSRTELSANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFG
ETKEAAEAARQRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDARV
EKVTDILKEGQEVEVLVLDVDNRGRIKLSIKDVAAAKASGV
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
gtgaacccggtaatcaaaaaattccagttcggtcagtcgaccgttaccctcgagactggc
cgtatcgcccgtcaggcctccggcgcagtattggtcaccgttgacgacgacgtcagcgta
ttggtgaccgtggttggcgccaagcaagccgatccaggcaagggtttcttccctctgtct
gttcactaccaggaaaagacttacgctgccggtaagatccctggcggtttcttcaagcgt
gaaggccgtccttccgagaaagagaccctgacctcgcgtctgatcgaccgtccgatccgc
cctctgttcccagaaggcttcatgaacgaagtgcaggttgtctgcaccgtggtttccacc
agcaagaaaaccgatccggacatcgctgcgatgatcggtacctcggctgcgctggccatc
tccggcattcctttcgacggtccgatcggtgctgcccgcgttgcattccacgaaagcacc
ggctacctgctgaacccgacttacgagcagcttcaggcatctagtctggacatggtcgta
gccggtaccgaagaagcggtactgatggttgaatcggaagccaaagagctgaccgaagac
cagatgctgggcgccgtactgttcgcccacgacgaattccaggctgttatccaggccatc
aaagagctggctgccgaagccgccaagccaacctgggactgggctcctgctccagaagcc
accgacctgctgggcgctatccgctccgagttcggcgaagcgatctcccaggcctacacc
atcaccgtcaaggccgaccgttatgctcgcctgggcgagttgaaagatcaggtcgtcgcc
aagctgtccggcgaagaaggccagccttccgctgccgacgtcaaagccgctttcggtgaa
atcgaataccgcaccgttcgcgaaaacatcgtcaacggcaagccacgtatcgacggtcgc
gacacccgcaccgtacgtccgctgaacatcgaagtcggcgttctgccgaagacccacggt
tcggcgctgttcacccgtggcgagactcaggccctggtcgtcgcgaccctgggtaccgcc
cgtgacgcacagctgctggacaccctggaaggcgagaaaaaagaccccttcatgctgcac
tacaacttccctccgttctcggtgggcgagtgtggtcgcatgggtggcgctggtcgtcgt
gaaatcggtcacggccgtctggcccgtcgttcggtccaggccatgctgccagccgccgac
gtgttcccttacaccatccgcgtagtatcggaaatcaccgagtccaacggttccagctcc
atggcttccgtttgcggtgcttccctggcgttgatggacgctggtgtgccgatgaaggcg
ccggttgccggtatcgccatgggcctggttaaagagggcgagaaattcgccgttctgacc
gacatcctgggtgacgaagaccacctgggcgacatggacttcaaggtagccggtactgcc
aaaggcgtcaccgcgctgcagatggacatcaagatcaaaggcatcaccgaagaaatcatg
gagatcgccctgggccaggccctggaagctcgcctgaacatcctcggccagatgaaccag
atcattggccagtcgcgtaccgagctgtcggccaacgctccgaccatgatcgcgatgaag
atcgacaccgacaaaatccgtgatgtcatcggtaaaggcggcgcgaccatccgtgcgatc
tgcgaagagaccaaggcttcgatcgacatcgaagacgacggctcgatcaagatcttcggc
gaaaccaaggaagccgcagaagccgcgcgtcagcgcgttctgggcatcaccgcggaagcc
gagatcggcaagatctacgttggtaaggttgagcgcatcgtcgacttcggcgcattcgtc
aacatcctgcctggcaaagacggtctggttcacatctccatgctgagcgatgctcgcgtc
gagaaagtgaccgacatcctgaaagaaggtcaggaagtggaagtgctggtactggacgtg
gacaaccgcggccgtatcaagctgtccatcaaagacgtggcagcagccaaggcttcgggc
gtttaa
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