Pseudomonas chlororaphis PA23: EY04_06405
Help
Entry
EY04_06405 CDS
T03201
Name
(GenBank) autotransporter
Organism
pch
Pseudomonas chlororaphis PA23
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Autotransporter
Pertactin
Beta_helix
DUF3575
Motif
Other DBs
NCBI-ProteinID:
AIC18535
LinkDB
All DBs
Position
complement(1433471..1436758)
Genome browser
AA seq
1095 aa
AA seq
DB search
MTLKPTRLSLAILAVLFPSLSMTAAAATYPSIDLSSPNGESMLLDPGDTVVNRQVAPAIL
ISGAGNALAGDRVSIESGIADTGVGATGITLRSGGTLDLSNSTINTQGYRNAQGVVVQDA
GSKAVLNGNTITTEGQESHGVYAREGGQAEVTGGTISARGYGAHGLNSAGAGSTITAQGL
EITAWGAEAAAVNAEDGGSIVLDKARLNANDTATQWGSRGIMINRGSVTATHTDIRTLRG
RGIETSGGTLSLSQSTIDAYSSGVHLGSASGASITQSTAKLTDVKIHSEAGYGLNAQSES
RATLERVQIDSNGSQVSGIWLPSKAVVSVKDSTIEMTGANGVGVDNRAGTFTMDGGSITT
HGTSGHGLYSSEAWTGSGGRATSTLRNVAIETFGQAAIGVVSRTAVSDIAFEGGSVTTHG
KTAYGMLVNGGRLQATGTTVRTTGDFATGLRMGNSGATVTLDGVDMRTSGTGAAGLMAYS
MKAGVDNEVTIRNSHIETEDGHGITVEGSGLTANLVDSMVIGKSRNGGNGTLLQLDEWTG
SDNAKLNIAARNVQLNALRSRLEGDVAIDSGSASLSLQDHSMLTGALLDRNGRTVDKLSI
DDSSVWRVRGNSAVADLDTTGSVSFDTPGSDFKTLDISGNLKGGGLFEMRTDIGSGQGDL
LRVAGTVEGNHRVLVANSGTEPATANGALKLIQTEGGPGSFSLANRGQVVDVGTYRYELK
RDDSAGGRPTDWRLLNTGRNAPVEPPAIIPPPVTPPPVEPPPVLPPPVPPLPVDPPPVTP
PGPDKPRPEHLSTAANAAINTSAASTAQAIWHAVSGTLARRMGELRQGKDQDGLWIRSFG
ERQKLDNHGARAFEQTVSGMQIGADKSLPVEDGRWYIGGIAGYSSADRHFSGDGSGSANS
YHLGAYTTWLADSGWYVDGVLKANRIQQDFKVEATDGQRVKGKTSQNAIGATLEAGRQLQ
LGEGWFVEPQAGMAVVHVNGDNYRASNGLDVSAGAGNSLQLRAGSALGRRIELANADFIQ
PYVKVGRAQEFNGKSTVRTNGIATRTDLSGGRTELGLGIAAALGASHRVYADYEYANGSK
LDKPWSVSAGYRYTW
NT seq
3288 nt
NT seq
+upstream
nt +downstream
nt
atgacactgaagccgactcgcctctctctcgccatcctggcggtgttgttcccgtcactc
tccatgaccgcagcagcggccacctatcccagcatcgacctgtcctcgcccaatggcgaa
tccatgctgctcgatcccggcgatacggtggtcaatcggcaagtcgctccagccatcctt
atcagtggggccggcaacgctctcgcgggcgatcgcgtcagcatcgaatccgggatcgcc
gatacgggagtcggggccacgggtattaccctgagatcgggcgggacactggacctgtcc
aatagcacgatcaacacccagggctaccgcaatgcccaaggcgtagtggtgcaggacgcc
ggcagcaaagccgtcctgaatggcaacacgatcaccaccgaaggacaggaatcccacggc
gtatacgcccgcgagggcggccaggccgaagtcaccggggggacgatcagcgcccggggc
tatggcgcccatggcctgaatagtgcgggagcaggttcgacaattaccgctcaaggcttg
gaaattaccgcctggggagcggaagccgccgcggtcaatgccgaggacggtgggagtatc
gtcctggacaaggccaggctgaatgccaacgacactgccacgcaatggggcagcagaggc
atcatgatcaaccgtggctcggtcactgcgacccataccgatatccgcacgctccgcgga
aggggtatcgagacatccgggggaacgctttcgctctcccaaagcaccatcgacgcctat
agttccggtgttcacctgggcagcgcttcgggggccagcatcacccaatccacggccaag
ttgaccgatgtgaagattcattccgaggcgggctatggcctcaacgcacaaagtgagagt
cgcgccaccctggaacgcgtacagatcgacagcaacggttcccaggtttcaggcatctgg
ctgccgagcaaggcggtcgtatccgtcaaggactcgaccatcgagatgaccggcgccaat
ggcgtgggtgtcgacaaccgcgcgggtactttcaccatggacggcggctcgatcaccacc
cacgggaccagcggccacggtctctactcatccgaagcctggaccggcagtggcggccgc
gcgaccagtacgctccgtaacgttgccatcgagacctttggtcaggcggccatcggtgtg
gtgtcgcgtaccgctgtgtccgatatcgcgttcgaaggcggttcggtgaccacccatggg
aagaccgcctacggcatgctggtcaatggcggtcgcctgcaggccacggggacgacagta
cgcaccacgggagatttcgccaccggcttgaggatgggcaacagcggcgcaacggtcacg
ctagacggcgttgacatgcgcaccagcggtacgggcgctgccggcttaatggcctactcg
atgaaggctggagtcgacaatgaagtcaccatccgcaacagccatatcgaaaccgaggat
gggcatggcatcaccgtcgaaggttccggcctgacagcgaacctggtcgatagtatggtc
atcggcaaatcgcgaaatggcggcaatggcaccctcctgcaactggatgaatggaccggc
agcgacaacgccaagctgaatatcgccgcacgtaacgtgcagctcaatgcactgcgcagc
cgcctcgaaggcgatgtagcgatcgatagcggatcggcgagcctgagcttgcaggaccat
tccatgctgaccggcgcactgctcgatcggaacgggcggaccgtggacaaactgagcatc
gacgacagcagtgtctggcgcgtgcgcggcaactcggcagtagcggacctggacacgacg
ggcagcgtttccttcgacaccccaggaagcgatttcaagacgctggacatcagcggcaat
ctcaagggtggcggcctgttcgaaatgcgcaccgacatcggctccggccagggtgacctg
ctgcgtgtcgcaggcaccgtcgagggcaatcaccgcgtactggtggccaacagcgggacc
gaacctgcgacggccaatggcgccctgaagcttatccagaccgaaggcggtccaggctcc
ttctcgttggccaacaggggccaggtcgtggacgtcgggacctaccgttatgagctcaag
cgcgatgacagcgcaggcggccgacctacggactggaggctgttgaataccggacgaaac
gccccggtcgagcctcctgcgataatcccccctccagtaactccgcctcccgtggagccc
ccgcctgtgctgccgccaccggttccgcctctccccgtcgatccgccaccggtcactccc
cctggccctgacaagccgcggccggaacatttgtcgacggctgccaacgcggcgatcaac
acctcggccgccagcaccgcgcaggcgatctggcatgcggtgtcaggcacgctggccagg
cgcatgggcgagctgcgtcagggcaaggatcaagacgggctctggatacgcagctttggc
gagcgtcagaagctcgataaccatggagcgcgagcattcgaacagaccgtcagcgggatg
caaatcggcgccgacaaatccctgccggtcgaggatggccgttggtacatcggcggcatc
gccggctacagctccgccgaccgccacttctcgggcgatggctcgggcagtgccaacagc
tatcacctgggcgcttataccacctggttggcggattccggttggtacgtcgatggcgtg
ctcaaggccaaccgtatacagcaggacttcaaggtggaggccaccgatggccaaagggtg
aaaggcaaaacgtcccagaacgccatcggcgccaccctcgaagcggggcgccagctgcaa
ttgggcgagggctggttcgtggagccgcaggctggcatggcggtcgtccacgtcaacggc
gataactatcgagccagcaacgggctcgacgtttcggcgggagccggcaattcactgcaa
ttacgggcaggctccgcgctgggtcgccgcatcgaactggccaacgcagattttatccaa
ccctatgtcaaggtaggccgtgcgcaggagttcaacggcaaaagtacggtgcgcaccaac
ggcatcgccacccgcaccgacctgtccggtggccgtaccgagctgggcctgggcatcgct
gccgcgctgggtgccagccaccgcgtctatgccgactatgaatacgccaacggctcgaag
ctggataaaccctggtcggtcagcgccggctaccggtatacgtggtga
DBGET
integrated database retrieval system
