Pseudomonas chlororaphis PA23: EY04_06925
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Entry
EY04_06925 CDS
T03201
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
pch
Pseudomonas chlororaphis PA23
Brite
KEGG Orthology (KO) [BR:
pch00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pch03016
]
EY04_06925
Enzymes [BR:
pch01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
EY04_06925
Transfer RNA biogenesis [BR:
pch03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
EY04_06925
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Motif
Pfam:
DNA_pol_A_exo1
HRDC
RNAseD_HRDC_C
Motif
Other DBs
NCBI-ProteinID:
AIC18632
UniProt:
A0AAP9VYQ4
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All DBs
Position
1538357..1539490
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AA seq
377 aa
AA seq
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MAIDIHWIRDNDSLGQFCTEWQKLPFVALDTEFMRVDTFYPIAGLLQVGDGQRAYLIDPL
TIDDWQPLAALLENSAVVKVVHACSEDLEVLLRLTGSLPAPLFDTQLAAAYLNLGFSMGY
SRLVQEVLGIELPKGETRSDWLQRPLSETQVSYAAEDAVHLAEVFTQLRPKLSEDKYNWV
LEDGAELVANLRREVDPYEVYREAKLAWKLSRAQLAVLRELCAWREREARARDLPRNRIV
REHSLWPLAKSQPDSLGALAKIEDMHPRTVRQDGEFLLGLIKRAASVSPDQWPPVVPEPL
PMDASPLLKRLRAVGQAEAERLGIAPELMLRKKTLESLLKSGFPNGPYQLPDSLRGWRRE
LMGQALLDSLATAGEQP
NT seq
1134 nt
NT seq
+upstream
nt +downstream
nt
gtggccatcgatattcactggattcgcgacaacgatagcctcggtcaattctgcaccgag
tggcagaagctgccattcgtcgccctcgacaccgaattcatgcgggtcgacaccttttat
ccgatcgccggcctgttgcaggttggcgatggccagcgcgcttacctcatcgaccccttg
accatcgacgactggcagccgctggcggccttgctggagaacagcgcggtggtcaaggtg
gtgcacgcctgcagcgaggacctcgaagtcctgctgcgcctgaccggcagcctgccggcg
ccgttgttcgacacgcaactggcggccgcctacctgaacctggggttctccatgggttac
tcgcggctggtccaggaagtgctgggcatcgagttgcccaagggcgagacccgctccgac
tggctgcagcgtccgctctcggaaacccaggtcagctacgccgccgaagacgccgtgcac
ctggccgaggttttcacccagctgcggccgaaactgtccgaggacaaatacaactgggtg
ctggaagacggcgccgagctggtggccaacctgcgccgcgaagtcgacccctacgaggtc
taccgcgaggccaagctggcctggaaactgtcccgcgcgcagctggcagtcttgcgtgaa
ctctgcgcctggcgcgagcgcgaggcgcgggcgcgggacttgccgcgcaaccggatcgtg
cgcgagcactcgctgtggccgttggccaagagccagccggacagccttggcgccctggcg
aaaatcgaagacatgcacccgcgcaccgtgcgccaggacggcgagttcctgctgggcctg
atcaagcgtgccgccagcgtcagccccgaccagtggccgccggtggtgcccgagcccttg
ccgatggacgcctcgcctctgctcaagcgcctgcgcgccgtgggccaggccgaagccgag
cgcctgggcatcgccccggaactgatgctgcgcaagaaaaccctggaaagcctgctcaag
agcggcttccccaacggaccctaccaattgcccgattcgctgcgtggctggcgccgcgaa
ttgatgggccaggcgctgctcgacagcctggccaccgccggagaacagccatga
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