Pseudomonas chlororaphis PA23: EY04_10630
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Entry
EY04_10630 CDS
T03201
Name
(GenBank) RNA ligase
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
pch
Pseudomonas chlororaphis PA23
Brite
KEGG Orthology (KO) [BR:
pch00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pch03016
]
EY04_10630
Enzymes [BR:
pch01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
EY04_10630
Transfer RNA biogenesis [BR:
pch03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
EY04_10630
Prokaryotic type
tRNA splicing ligases
EY04_10630
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
TFX_C
KH_NucS_shadow
Motif
Other DBs
NCBI-ProteinID:
AIC19331
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All DBs
Position
2346371..2347597
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AA seq
408 aa
AA seq
DB search
MEHKTYQLLEVANGKPIKMWTEGVPVENEARQQLMNTAKMPFIFKHLAVMPDVHLGKGST
IGSVIPTVGAIIPAAVGVDIGCGMIAARTSLTAADLPDNLHGLRSAIEQAVPHGRTSPRS
GRDKGAWGDVPRQADHAWAALQPRFKAITDKYPALANSNNRQHLGTLGGGNHFIEVCLDE
ANRVWFMLHSGSRGVGNAIGNLFIHLAQADMRQHIANLPDRDLAYFEEGSRHFDDYVEAV
AWAQDFARHNRELMMQLVIQATRQVIRKPFEVALEAVNCHHNYVQKERHFGEEVLVTRKG
AVSAQKGELGIIPGSMGAKSFIVRGLGNEEAFCSCSHGAGRTMSRTKAKNTFTLADQIRA
TAHVECRKDTAVIDEIPMAYKDIDQVMHAQRELVEVLHTLRQVVCVKG
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atggaacacaagacctaccaactgctggaagtcgccaacggcaagccgatcaagatgtgg
accgagggcgtgccggtggaaaacgaagcccgccagcagctgatgaacaccgcgaagatg
ccgttcatcttcaagcacctggcggtaatgccggatgtgcacctgggcaagggctcgacc
attggcagcgtgatccccaccgtgggtgcgatcatcccggcggcggtcggggtggatatc
ggctgcggcatgatcgccgcccgtacttcgctgaccgctgccgacctgccggataacctg
cacggtttgcgcagcgccatcgagcaggcggtgccccacggtcgtacttcgccgcgcagc
ggtcgcgacaagggtgcatggggcgacgtgccgcgccaggccgaccatgcctgggcggcc
ttgcagccacgcttcaaggcgatcaccgacaagtacccggcgctggccaacagcaacaac
cgccagcacctgggtaccctcggcggcggcaaccacttcatcgaggtctgcctggatgaa
gccaaccgggtctggttcatgctccacagcggttcccgtggcgtgggtaacgccatcggc
aacctgttcatccacctggcccaggcggacatgcgccagcacatcgccaacctgccggac
cgcgacctggcctacttcgaggaaggcagccggcacttcgacgattacgtcgaggccgtg
gcctgggcccaggacttcgcccggcataaccgtgaattgatgatgcagttggtgatccag
gccacccgccaggtgatccgcaagcctttcgaggtggcgctggaggcggtgaactgccac
cacaactatgtgcagaaggagcgccacttcggtgaagaggtgctggtgacccgcaagggc
gcggtgtcggcgcagaagggcgagctggggatcatccccggatcgatgggcgccaagagc
ttcatcgttcgcgggctgggtaacgaggaggcgttctgctcctgcagccacggtgccggg
cgcaccatgagccgcaccaaggccaagaacaccttcaccctggccgaccagatccgcgcc
accgcccatgtggagtgccgcaaggacaccgcggtgatcgatgaaatcccgatggcctac
aaggacatcgaccaagtcatgcacgcccagcgcgagctggtggaagtgctgcacaccctg
cgtcaggtggtgtgcgtcaaggggtag
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