Pseudomonas chlororaphis PA23: EY04_13145
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Entry
EY04_13145 CDS
T03201
Name
(GenBank) exonuclease SbcD
KO
K03547
DNA repair protein SbcD/Mre11
Organism
pch
Pseudomonas chlororaphis PA23
Brite
KEGG Orthology (KO) [BR:
pch00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pch03400
]
EY04_13145
DNA repair and recombination proteins [BR:
pch03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
EY04_13145
Archaeal homologous recombinant proteins
EY04_13145
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SbcD_C
Metallophos
Metallophos_2
Motif
Other DBs
NCBI-ProteinID:
AIC19814
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All DBs
Position
complement(2892660..2893904)
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AA seq
414 aa
AA seq
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MRLFHTSDWHLGQNLHGQERDFEHACFLEWLLRQLALHSPDVLLIAGDIFDTVNPPVKAQ
ERLYDFIVSAHEQQPGLTIVMIAGNHDSGSRIELPAPLMRRLRTHALGRVLWLDDGQLDS
ERLLLPLPDASGAIAGWCLALPFLRPAEVTGPHLGDDYLRGIGQVHEWLIAAANAKRQPG
QALVAISHAHMAGGSVSEDSERSLIIGNAEALPASLFGPSISYVALGHLHKPQKVNGEER
IRYSGSPIPLSFSEIDYQHQILDIQLDGETLVSVEPRLIPRAVNLQRLGPAPLAEILLQL
EELPDIDLLAEEQRQPWLEVRVRLDEPQPDLRQQVESALQGKAVRLVRIAAEYAGNGGRE
GDDGAAQLVELDQLSPQDLFSRAWLDSYGSEVDEQTLKDFAQLLQEVQHEEEQP
NT seq
1245 nt
NT seq
+upstream
nt +downstream
nt
ttgcgtctgtttcacacctccgactggcacctggggcagaacctccatggccaggaacgc
gatttcgagcatgcttgctttcttgaatggctgttgcgccagctggcgctgcacagccct
gacgtactgctgatcgctggcgatatctttgacacggtcaatccgccggtcaaagcccag
gagcggctgtacgactttattgtcagtgcccatgaacagcagcccggcctgaccattgtg
atgatcgccggcaaccatgactccggttcgcgcatcgagttgccggcgcccttgatgcgg
cgtctgcgcacccatgccctgggccgggtgctgtggctggacgacgggcagctggacagc
gagcgtctgctgctgccgttgcccgatgccagcggcgcgattgccggctggtgcctggcg
ctgccgttcctgcggccggcggaagtcaccggcccgcacctgggcgacgattacctgcgc
ggtatcggccaggtgcatgagtggctgatcgccgcggccaacgccaaacgtcagccaggc
caggcgctggtcgccatcagtcacgcgcacatggccggcggttcggtgtcggaagactcc
gagcgcagcctgatcatcggcaatgccgaggccctgcccgccagtctgttcggcccgagc
atcagctacgtggccctggggcatctgcacaagccgcagaaggtcaacggcgaggaacgc
atccgctacagcggctcgccgattccgctgtcgttctcggagatcgactaccagcaccag
atcctcgatatccagctcgacggcgaaaccctggtcagcgtcgagccgcggctgatcccg
cgggcggtcaacctgcaacgcctgggcccggcgccactggcggagatcctgctgcaactg
gaagaactgccggacatcgacctgttggccgaagagcagcgccagccctggctggaagta
cgggtgcgcctggacgagccgcaaccagacctgcgccagcaagtggaaagcgccctgcag
ggcaaggccgtgcgcctggtgcggattgccgccgaatacgccggcaatggtggccgcgag
ggcgacgacggcgccgcgcaactggtggagctggaccagctcagcccgcaggacctgttc
agccgcgcctggctggacagctacggcagcgaggtggacgaacagaccctcaaggacttc
gcgcaactgctccaggaagtgcagcacgaggaggagcagccatga
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