Pseudomonas chlororaphis PA23: EY04_28795
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Entry
EY04_28795 CDS
T03201
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pch
Pseudomonas chlororaphis PA23
Pathway
pch03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pch00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
EY04_28795
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pch03021
]
EY04_28795
03400 DNA repair and recombination proteins [BR:
pch03400
]
EY04_28795
Enzymes [BR:
pch01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
EY04_28795
Transcription machinery [BR:
pch03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
EY04_28795
DNA repair and recombination proteins [BR:
pch03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
EY04_28795
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
AIC22761
UniProt:
A0A0E1EHU7
LinkDB
All DBs
Position
complement(6315521..6319720)
Genome browser
AA seq
1399 aa
AA seq
DB search
MKDLLNLLKNQGQVEEFDAIRIGLASPEMIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVALAKVRRERMAHIELASPVAHIWFLKSL
PSRIGLLMDMTLRDIERVLYFESYVVIDPGMTTLEKGQLLNDEQYFEALEEFGDDFDARM
GAEAVRELLHAIDLEHEIGRLREEIPQTNSETKIKKLSKRLKLMEAFQGSGNLPEWMVLT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLSAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIFGKLEMRGLATTIKAAKKMVERELPEVWDVLAEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTREAINAKGEGRVFADLQEVDRVFRAG
EAALHAKVKVRITETVNDRDGGSVTNTRIVDTTVGRALLFQVVPKGLSYDVVNLPMKKKA
ISKLINQCYRVVGLKETVIFADQLMYTGFAYSTISGVSIGVNDFVIPDEKARIIGAATDE
VKEIESQYASGLVTQGEKYNKVIDLWSKANDEVSKAMMANLSKEKVIDRHGDEVEQESFN
SMYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLSVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEIDCGTEHGLVMTPHIEGGDVVEPLGERVL
GRVIARDVFKPGTEDVIVPAGTLVDEKWVEFIELNSIDEVIVRSPISCETRYGICAKCYG
RDLARGHQVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRTSAADSVQVKNGGTVRL
HNLKHVERVDGHLVAVSRSGELAIADDFGRERERYKLPYGAVISVKEGDKVDAGSIVAKW
DPHTHPIVTEMKGTVTYVGMEEGITIKRQTDELTGMTNIEVLDAKDRPAAGKDIRPAVKM
VGDDGKDLLLPGTDVPAQYFLPANALVGVADGARIAIGDVIARIPQETSKTRDITGGLPR
VADLFEARRPKEASILAEVSGTIAFGKETKGKRRLVITPNDGSDPYEELIPKWRHLNVFE
GEQVNRGEVISDGPSDPHDILRLLGVSALAKYIVNEIQDVYRLQGVKINDKHIETILRQM
LRKVEIAESGDSSFIKGDQMELTHVLVENERLNTEDKFVAKFTRVLLGITKASLSTESFI
SAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRLIPAGTGLAYHSERKRRRDADKPLR
VSASEVEAALTEALNSSGN
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagacctactgaatttgctgaaaaaccagggtcaagtcgaagagttcgacgccatc
cgtatcggattggcctcgcctgagatgatccgttcgtggtcgttcggtgaagttaaaaag
ccggaaaccatcaactaccgtacgttcaagcctgagcgtgacggcctgttctgcgccaag
atctttggcccggtaaaggattacgagtgcctgtgcggtaagtacaagcgcttgaagcat
cgtggcgtgatctgcgaaaagtgcggcgttgaagttgcactggccaaggttcgccgtgag
cgcatggcgcacatcgaactggcttcgccagttgcccacatctggttcctgaaatcgctg
ccgtcccgtatcggcctgctgatggacatgaccctgcgtgatatcgagcgtgttctctac
ttcgagagctatgtcgttatcgacccgggcatgaccactctggaaaaaggtcagttgctc
aacgacgagcagtacttcgaagcactggaagagttcggtgacgacttcgacgcccgcatg
ggtgccgaggctgtccgcgagctgttgcacgctatcgacctggagcacgagattggccgt
ctgcgcgaagagattccgcaaaccaactcggaaaccaagatcaagaaactgtccaagcgt
ctgaagttgatggaagccttccagggttccggcaacctgccagagtggatggtgctgacc
gttctgccggttctgccgccagatctgcgtccactggtcccgctggatggtggtcgtttc
gcgacttccgacctcaacgatctgtatcgtcgagtgatcaaccgtaacaaccgcttgaag
cgcctgctcgatctgtccgctccggacatcatcgtgcgcaacgaaaagcgtatgttgcag
gaagccgtcgacgcactgctcgacaacggtcgtcgtggccgcgctatcaccggttccaac
aagcgtcctctgaaatccctggctgacatgatcaagggtaagcaaggtcgtttccgtcag
aacttgctcggtaagcgtgttgactactccggtcgttcggtaattaccgtaggcccgacc
ctgcgtctgcaccagtgcggtctgcctaagaaaatggctctcgagctgttcaaaccgttc
attttcggcaagttggaaatgcgtggcctggccaccaccatcaaagccgcgaagaagatg
gtcgagcgcgagctgccagaggtttgggacgttctcgccgaagtgattcgcgaacaccca
gtgctcctcaaccgtgcaccgacccttcaccgtctgggtatccaggcgtttgaaccggta
ctgatcgaaggtaaggctatccagctgcaccctctggtctgtgctgcgtacaacgccgac
ttcgacggcgaccaaatggccgtgcacgtaccgctgacactggaagcccagttggaagcg
cgtgcgttgatgatgtcgaccaacaacatcctgtcgccagccaacggtgagccaatcatc
gttccgtcgcaggacgttgtattgggtctgtactacatgactcgtgaagcgatcaacgcc
aagggcgaaggtcgtgtgttcgcggatctgcaggaagttgaccgtgtgttccgtgccggc
gaagccgcactgcatgccaaggtcaaggtgcggatcaccgaaaccgtcaacgatcgtgat
ggcggcagcgtgaccaacacccgtatcgtcgacaccactgtcggccgtgcgctgttgttc
caggttgtgccaaaaggtctgtcgtacgacgtcgtcaacctgccgatgaagaagaaggcg
atctccaagctgatcaaccagtgctaccgcgtggttggtctgaaagagaccgtgatcttc
gctgaccagttgatgtacaccggttttgcttactcgaccatttccggcgtttctatcggt
gttaacgacttcgttatcccggatgaaaaagcccgcatcatcggtgctgccaccgacgaa
gtgaaagagatcgagagccagtacgcctccggcctggtgacccagggcgagaagtacaac
aaagtgatcgacctctggtcgaaagcgaacgacgaagtctccaaggcgatgatggccaac
ctctcgaaagagaaggtcatcgaccgtcacggcgacgaagtcgagcaagaatctttcaac
tcgatgtacatgatggccgactcgggtgcgcggggttccgcagcacagattcgtcagctg
gccggtatgcgtggtctgatggccaagccggacggttccattatcgaaacgccgattact
gcgaacttccgtgaaggtctgagcgtactccagtacttcatctcgactcacggtgctcgt
aaaggtctggcggataccgcgttgaaaactgcgaactccggttacctgactcgtcgtctg
gtagacgtggcgcaggatctggttgtaaccgagatcgactgtggcaccgaacacggcctg
gtaatgactccgcacattgaaggcggcgacgttgtagagccgttgggtgagcgcgtgttg
ggtcgtgttattgcccgtgacgtattcaagccaggtaccgaggacgtcatcgttcctgcc
ggcactctggtcgacgagaagtgggttgagttcatcgagctgaacagcatcgacgaagtg
atcgtgcgttcgccgatcagttgcgaaacccgctacggcatttgcgccaagtgctacggc
cgcgacctggctcgtggtcaccaggtgaacatcggtgaagctgtcggcgttatcgctgct
cagtccatcggtgagccgggtacccagctgacgatgcgtacgttccacatcggtggtgcg
gcaagccggacctccgcggccgacagcgttcaggtgaagaatggcggtaccgtccgtctg
cacaacctgaagcacgttgagcgagtggatggtcatctggttgctgtgtcccgttccggt
gagctggcgattgctgacgacttcggtcgtgagcgcgagcgttacaagctgccgtacggt
gctgtgatttcggttaaagagggtgacaaggtcgacgctggctctatcgtggccaagtgg
gatccgcacacccacccaatcgttaccgaaatgaaaggtaccgtgacctacgtgggcatg
gaagaaggcatcacgatcaagcgtcagactgacgaattgaccggtatgaccaacattgaa
gttctcgatgccaaagaccgtccggctgcaggtaaggacatccgtcctgcagtgaagatg
gtgggtgacgatggcaaagatctgctgttgccaggtaccgacgtaccggcccagtacttc
ctgccagccaacgccctggtcggtgttgcggacggtgcgcggatcgcgatcggtgacgtt
atcgcgcgtattccgcaagaaacttcgaagactcgtgacatcaccggtggtctgccgcgt
gttgccgacctgttcgaagctcgtcgtccgaaagaggcctcgatcctggctgaagtcagc
ggtaccatcgcgttcggtaaagagaccaaaggcaagcgccgtctggtcattaccccgaac
gacggtagcgatccgtacgaagagctgattccgaagtggcgccacctgaacgtcttcgaa
ggcgaacaggtaaaccgcggcgaagttatctccgacggtccaagcgatccacacgacatc
ctgcgtctgctgggtgtgagtgcgctggccaagtacatcgtgaacgagattcaggacgtt
taccgtctgcaaggcgtgaagatcaacgacaagcacatcgagaccatcctgcgtcagatg
ctgcgtaaggttgagatcgctgaatccggcgattccagtttcatcaagggcgaccagatg
gaactgactcacgtactggtagagaacgagcgtctgaacaccgaagacaagtttgtcgcc
aagttcacccgcgttctgctgggcatcaccaaggcgtcgctgtcgaccgaatcgttcatc
tcggcggcctctttccaagagaccactcgcgtactgaccgaagcggcggtaaccggcaag
cgtgattacctgcgcggcctgaaagaaaacgtcgtcgtgggtcgcctgatcccggctggt
accggcctggcgtatcacagcgaacgtaagcgtcgtcgtgatgccgacaagccgctgcgc
gtaagcgcaagtgaagttgaagctgcactgaccgaagcgctgaactccagcggtaactga
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integrated database retrieval system
