Pseudomonas chlororaphis PA23: EY04_28800
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Entry
EY04_28800 CDS
T03201
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
pch
Pseudomonas chlororaphis PA23
Pathway
pch03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pch00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
EY04_28800 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pch03021
]
EY04_28800 (rpoB)
03400 DNA repair and recombination proteins [BR:
pch03400
]
EY04_28800 (rpoB)
Enzymes [BR:
pch01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
EY04_28800 (rpoB)
Transcription machinery [BR:
pch03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
EY04_28800 (rpoB)
DNA repair and recombination proteins [BR:
pch03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
EY04_28800 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
7TMR-HDED
Motif
Other DBs
NCBI-ProteinID:
AIC22762
LinkDB
All DBs
Position
complement(6319785..6323858)
Genome browser
AA seq
1357 aa
AA seq
DB search
MAYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQAGATKDQFRDVGLHAAFKSV
FPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTYAVPLRVKVRLIIFDKESSNKAIKD
IKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSARI
IPYRGSWLDFEFDPKDCVFVRIDRRRKLPASVLLRALGYTTEEVLDAFYTTNVFHVRGES
LSLELVPQRLRGEIAVLDIQDDKGKVIVEQGRRITARHINQLEKAGIKELEVPLDYVLGR
TTAKVIVHPATGEILAECNTELNTEILAKIAKAQVVRIETLYTNDIDCGPFVSDTLKIDS
TTNQLEALVEIYRMMRPGEPPTKDAAETLFNNLFFSPERYDLSAVGRMKFNRRIGRTEIE
GSGVLCKEDIVAVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRVERAV
KERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSRFMDQNNPLSEITHKRRVSALGP
GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAAYARTNQYGFLESPYRVVK
EGLVTDEIVFLSAIEEADHVIAQASATMNDKGQLIDELVAVRHLNEFTVKAPEDVTLMDV
SPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVARDSGVC
VVARRGGVIDSVDASRIVVRVADDEVEPGEAGVDIYNLTKYTRSNQNTCINQRPLVSKGD
RVQRSDIMADGPSTDMGELALGQNMRIAFMAWNGFNFEDSICLSERVVQEDRFTTIHIQE
LTCVARDTKLGPEEITADIPNVGEAALNKLDEAGIVYVGAEVGAGDILVGKVTPKGETQL
TPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFTRDGVERDARALSIEKSQLDE
IRKDLNEEFRIVEGATFERLRSALVGHKAEGGAGLKKGQEITDEVLDGLEHGQWFKLRMA
EDALNEQLEKAQAYIVDRRRLLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIRRRIQPG
DKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDVVLNPLGVPSRMNVGQILETHLGLAAKG
LGEKINRMVEEQRKVAELRKFLDEIYNQIGGRNEDLDSFSDQEILDLAKNLRGGVPMATP
VFDGAKESEIKAMLKLADLPESGQMQLTDGRTGNKFERPVTVGYMYMLKLNHLVDDKMHA
RSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMY
KNIVDGDHRMEPGMPESFNVLIKEIRSLGIDIDLETE
NT seq
4074 nt
NT seq
+upstream
nt +downstream
nt
atggcttactcatatactgagaaaaaacgtatccgcaaggactttagcaagttgccggac
gtcatggatgtgccgtacctcctggccatccagctggattcgtatcgtgaattcttgcaa
gcgggagcgactaaagatcagttccgcgacgtgggcctgcatgcggccttcaaatccgtt
ttcccgatcatcagctactccggcaatgctgcgttggagtatgtcggttatcgcctgggc
gaaccggcatttgatgtcaaagaatgcgtgctgcgcggtgtaacttacgccgtacctttg
cgggtaaaagttcgtctgatcattttcgacaaagaatcgtcgaacaaagcgatcaaggac
atcaaagagcaagaagtctacatgggtgaaatccccctgatgactgagaacggtaccttc
gtaatcaacggtaccgagcgtgtaatcgtttcccagctgcaccgttcccctggcgtattc
ttcgaccacgaccgtggcaagacgcacagctccggtaagctgctgtactccgcacgtatc
attccttaccgcggttcctggttggacttcgagttcgacccgaaagactgcgtattcgtg
cgtatcgaccgtcgtcgcaagctgcctgcatcggtactgctgcgtgcgttgggctacacc
actgaagaagtgctggacgctttctacaccaccaacgtattccacgtgcgcggcgaaagc
ctgagcctggagttggtgcctcagcgcctgcgtggtgaaattgcggtcctcgatattcag
gatgacaaaggcaaggttattgtcgagcagggtcgtcgtattactgctcgccacatcaac
cagctggaaaaagccgggatcaaagagctggaagtgcctctggactacgtcctgggtcgt
actaccgccaaggtcatcgtgcatccggccaccggcgaaatcctggcagagtgcaacacc
gagctgaacaccgagatcctggcgaagatcgccaaggctcaggttgtgcgcatcgaaacg
ctgtacaccaacgatatcgattgcggtccgttcgtttccgacactctaaagatcgactcc
accaccaaccaactggaagcgttggtcgagatctatcgcatgatgcgtcctggcgagcct
ccaaccaaggatgcggccgagaccctgttcaacaacctgttcttcagccctgagcgttat
gacctgtctgcggtcggccggatgaagttcaaccgtcgtatcggtcgtaccgagatcgaa
ggttccggcgtgttgtgcaaggaagacatcgttgcggttctgaagactctggtcgacatc
cgtaacggcaaaggcatcgtcgatgacatcgaccacctgggtaaccgtcgtgttcgctgc
gtaggcgagatggccgagaaccagttccgcgttggcctggtgcgtgtagagcgtgcggtc
aaagagcgtctgtcgatggctgaaagcgaaggcctgatgccgcaagacctgatcaacgcc
aagccagtggcggcggcggtgaaggagttcttcggttccagccagctgtcccggttcatg
gaccagaacaacccgctgtccgagatcacccacaagcgccgtgtctctgcactcggccca
ggcggtctgactcgtgagcgtgcaggcttcgaagttcgtgacgtacacccgactcactat
ggtcgtgtatgcccgatcgagacgccggaaggtccgaacatcggtctgatcaactccctg
gccgcctatgctcgcaccaaccagtacggtttcctcgagagcccgtaccgcgtggtgaaa
gaaggtctggtgaccgacgagatcgtgttcctgtccgccatcgaagaggccgatcacgtg
atcgcccaggcttcggcgaccatgaacgacaaaggtcagctgatcgacgagctggtagcc
gttcgtcacctgaacgaattcactgtcaaggcgccagaagacgtcaccttgatggacgtt
tcgccgaagcaggtagtttcggttgcggcgtcgctgattccgttcctcgagcacgacgac
gccaaccgtgcgttgatgggttcgaacatgcagcgtcaggctgtaccaaccctgcgtgcc
gacaagccgctggtaggtaccggcatggagcgtaacgttgcccgtgactccggcgtctgc
gtcgtggctcgtcgtggcggtgtgatcgactcggttgatgccagccgtatcgtggttcgt
gttgcagatgacgaagttgagccaggcgaagccggtgtcgacatctacaacctgaccaaa
tacacccgctccaaccagaacacttgcatcaaccagcgtccgctggtgagcaagggtgat
cgggttcagcgcagcgacatcatggccgacggtccgtccaccgacatgggtgaactggct
ctgggtcagaacatgcgcatcgcgttcatggcatggaacggcttcaacttcgaagactcc
atctgcctgtccgagcgtgtggtccaggaagaccgcttcaccacgatccacatccaggaa
ctgacctgtgtggcccgtgacaccaagcttggcccagaggaaatcactgcggatatcccg
aacgtgggtgaggctgcactgaacaagctggacgaagccggtatcgtttatgtcggtgct
gaagttggcgcaggcgacatcctggtcggtaaggtcactccgaaaggcgagacccagctg
actccggaagaaaaactgctgcgtgcaatcttcggtgaaaaagccagcgacgttaaagac
acctccctgcgcgtacctaccggtaccaagggtactgtcatcgacgtacaggtcttcact
cgtgacggtgtagagcgtgacgctcgtgccctgtcgatcgagaagagccagctcgacgag
atccgcaaggatctgaacgaagagttccgtatcgtcgaaggcgccactttcgagcgtctg
cgttccgctctggtcggccacaaagccgaaggcggcgccggcctgaagaaaggtcaggaa
atcaccgacgaagtactcgacggtcttgagcatggccagtggttcaaactgcgcatggct
gaagatgctctgaacgagcagctcgagaaggcccaggcctacatcgttgatcgccgccgt
ctgctggacgacaagttcgaagacaagaagcgcaagctgcagcagggcgatgacctggct
ccaggcgtgctgaaaatcgtcaaggtttacctggcaatccgtcgtcgcatccagccgggc
gacaagatggccggtcgtcacggtaacaagggtgtggtctcggtgatcatgccggttgaa
gacatgccgcacgatgccaacggcaccccggtcgacgtcgtcctcaacccgttgggcgta
ccttcgcgtatgaacgttggtcagattctcgaaactcacctgggcctcgcggccaaaggt
ctgggcgagaagatcaaccgcatggtcgaagagcagcgcaaggtcgcggaactgcgtaag
ttcctggacgagatctacaaccagatcggtggtcgtaacgaagatctggatagcttctcc
gatcaggaaatcctggatctggcgaaaaacctacgtggcggcgtgccgatggccactccg
gtgttcgacggtgccaaggaaagcgaaatcaaggccatgctgaaactggcggacctgcca
gaaagcggccagatgcaactgaccgacggccgtaccggcaacaagttcgagcgcccggtt
actgttggctacatgtacatgctgaagctgaaccacttggtagacgacaagatgcacgct
cgttctaccggttcgtacagcctggttacccagcagccgctgggtggtaaggcgcagttc
ggtggtcagcgtttcggggagatggaggtctgggcactggaagcatacggtgctgcatac
actctgcaagaaatgctcacagtgaagtcggacgatgtgaacggccggaccaagatgtac
aaaaacatcgtggacggcgatcaccgtatggagccgggcatgcccgagtccttcaacgtg
ttgatcaaagaaattcgttccctcggcatcgatatcgatctggaaaccgaataa
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integrated database retrieval system
