Pseudomonas chlororaphis PA23: EY04_29300
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Entry
EY04_29300 CDS
T03201
Name
(GenBank) LysR family transcriptional regulator
KO
K27042
LysR family transcriptional regulator, trpBA operon transcriptional activator
Organism
pch
Pseudomonas chlororaphis PA23
Brite
KEGG Orthology (KO) [BR:
pch00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pch03000
]
EY04_29300
Transcription factors [BR:
pch03000
]
Prokaryotic type
Helix-turn-helix
LysR family
EY04_29300
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LysR_substrate
HTH_1
HTH_20
HTH_5
MarR_2
HTH_30
HTH_IclR
HTH_24
I-HmuI_NUMOD-like
HTH_23
Motif
Other DBs
NCBI-ProteinID:
AIC22853
LinkDB
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Position
complement(6417271..6418164)
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AA seq
297 aa
AA seq
DB search
MSHDLPPLNALRAFEATARLNSVSQAAEQLHVTHGAVSRQLKVLEEHLGVSLFVKEGRGL
KLTDAGVRLRDASSDAFERLRTVCAELSQSTADAPFVLGCSGSLLARWFIPRLGRLNADL
PDLRLHLSAGEGDLDPRRPGLDALLVFAEPPWPADMQVFELASERIGPVLSPRYSRYEQL
REAPASALLNETLLQTSSRPQAWPSWARQNGIDAGALKFGQGFEHLYYLLEAAVAGLGVA
IAPQPLVAEDLRAGRLVAPWGFCETPGQLALWLPKRAADGRARQLAQWLSNELRQTP
NT seq
894 nt
NT seq
+upstream
nt +downstream
nt
atgagccacgacctgcccccgctgaacgccctccgggccttcgaagccaccgctcgcctg
aacagcgtcagtcaggcggccgaacagctgcacgtcacccatggcgcggtcagccgccag
ttgaaggtacttgaagagcatctcggggtgagcctgttcgtcaaggaaggacgcggcctg
aaactcacagatgccggggtgcgcctgcgcgatgccagcagcgatgccttcgagcgcctg
cgcacggtctgcgccgagttgagccagagcaccgccgatgcgccgttcgtgctcggttgt
tccggcagcctgctggcgcgctggttcatcccgcgcctggggcggctgaatgccgacctg
ccggacctgcgcctgcacctgtcggccggcgaaggcgatctcgacccgcgccggccgggg
ctggatgccttactggtattcgccgagccgccgtggccggcggacatgcaggtctttgaa
ctggccagcgagcgcatcggcccggtgctcagcccgcgctacagccgttacgagcaactg
cgcgaggcgccggccagtgcgctgctcaacgagacattgctacagaccagctcgcgcccg
caggcctggcccagctgggcacggcagaacggcatcgacgccggggcgctgaagttcggc
cagggtttcgagcatttgtattatttgctggaggccgcggtggccgggctgggcgtggcg
atcgcgccgcagccgctggtggccgaggacctgcgggccgggcgcctggttgccccgtgg
ggtttctgtgaaaccccggggcaactggcgttgtggctacccaagcgcgccgcggacgga
cgcgcccggcagctggcgcagtggctcagtaatgagctgcgccagactccttaa
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