Pseudomonas chlororaphis PA23: EY04_32070
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Entry
EY04_32070 CDS
T03201
Name
(GenBank) RNA polymerase sigma factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
pch
Pseudomonas chlororaphis PA23
Pathway
pch02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
pch00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
EY04_32070
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pch03021
]
EY04_32070
Transcription machinery [BR:
pch03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
EY04_32070
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_r4
HTH_23
Rv2175c_wHTH
Sigma70_ECF
HTH_17
HTH_24
Sigma70_r3
MerR
HTH_29
FaeA
HTH_31
Motif
Other DBs
NCBI-ProteinID:
AIC23393
LinkDB
All DBs
Position
complement(7017530..7018048)
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AA seq
172 aa
AA seq
DB search
MSSAQSPHSDLVGALYRDHRGWLLAWLRRNVACPQRAEDLSQDTFVRLLGRDELKAPREP
RAFLVAIAKGLLFDYFRRAALEQAYLTELMLIPEEEQPSPEEQQSILEDLKAIDRLLGKL
SSKARAAFLYNRLDGLGHAEIAERLGVSVPRVRQYLAQGIRQCYVALYGEPL
NT seq
519 nt
NT seq
+upstream
nt +downstream
nt
gtgtcgtcagcccaaagcccccacagtgacctcgttggcgcgttgtatcgcgaccatcgc
ggctggctgctggcctggctgcgacgcaacgtggcctgcccacaacgggccgaggacctg
agccaggacaccttcgtccgcctgctgggccgcgacgaactgaaggccccgcgcgagccg
cgggcgttcctggtggccatcgccaagggcctgctgttcgactacttccgccgcgccgcg
ctggaacaggcctacctcaccgaactgatgctgatcccggaagaggaacaaccctccccg
gaagaacagcaatcgatcctcgaagacctcaaggccatcgaccgcctgctgggcaagctg
tcgagcaaggcccgcgcggccttcctctataaccgcctcgatggcctcggccatgccgaa
atcgccgaacgcctcggcgtgtccgtgccgcgggtcaggcagtacctggcccagggcatt
cgccagtgctacgtcgccctgtacggtgagccgctatga
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