Ectopseudomonas chengduensis: QYM18_04780
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Entry
QYM18_04780 CDS
T09586
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
pche
Ectopseudomonas chengduensis
Pathway
pche02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pche00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
QYM18_04780 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pche03021
]
QYM18_04780 (rpoD)
Transcription machinery [BR:
pche03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
QYM18_04780 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
TMPIT
ING
ADIP
COG6_N
Motif
Other DBs
NCBI-ProteinID:
WKC38400
LinkDB
All DBs
Position
999687..1001534
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AA seq
615 aa
AA seq
DB search
MSVKAQQQSRIKELITLGREQKYLTYAEVNDHLPEDISDPEQVEDIIRMINDMGIPVHES
APDADALMLADADTDEAAAEEAAAALAAVETDIGRTTDPVRMYMREMGTVELLTREGEIE
IAKRIEEGIREVMSAIAHFPGTVDGILAEYTRVTTEGGRLAEVLSGYIDPDDGSVPDEAA
APVPVKEGAAAEESDDEEEDESGDDEEEEGDGGPDPEEAARRFTAVAEQQDKVLKALKKH
GRGSKQATEELATLAELFMPIKLVPKQYDALVTKVRDALDRLRAQERAIMQLCVRDARMP
RADFLRLFPGNEIDMDWAADLAKGKAKYAEALGNLQADIQRCQQKLADLEAECSLTLAEI
KDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDK
FEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREP
TPEELGERMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTMQSPIDVATVE
SLKEATREVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKL
RHPTRSEHLRSFLDE
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atgtccgtaaaagcgcagcagcaatctcgtatcaaagagttgatcaccctgggtcgtgag
cagaagtatctgacttacgcagaggtcaacgaccacttgcctgaggacatttcagatcct
gagcaggtggaagacatcatccgcatgatcaatgacatggggatcccggtacacgagagt
gctccggatgcagacgccctgatgctggccgatgccgacaccgacgaggctgcagccgaa
gaagccgctgccgccctcgccgctgtcgagaccgatatcggccgcaccactgacccggtg
cgcatgtacatgcgcgaaatgggtaccgtggaactgctgacccgcgaaggcgagatcgaa
atcgccaaacgcatcgaggaaggcatccgcgaagtcatgagcgccatcgctcacttcccc
ggcaccgtcgacggcatcctcgccgagtacacccgcgtcaccaccgagggcggccgcctg
gccgaagtcctcagtggctacatcgacccggatgacggcagcgtgcctgacgaagccgcc
gcccccgttcccgtcaaggaaggcgccgccgctgaagaaagcgacgacgaagaagaagac
gagagcggcgacgacgaggaagaagaaggcgatggcggcccggacccggaagaagcggct
cgccgtttcactgccgtggccgagcagcaggacaaagtcctcaaggcgctgaagaagcat
ggtcgtggcagcaagcaggccaccgaagagctggccaccctggccgagctgttcatgccg
atcaagctggtgcccaagcagtacgacgccctggttaccaaggtgcgcgacgccctcgac
cgtctgcgtgcgcaagaacgcgccatcatgcagctgtgcgtacgtgatgcgcgcatgccg
cgtgccgacttcctgcgcctgttcccgggcaacgaaatcgacatggattgggccgccgac
ctggccaagggcaaggccaagtacgccgaagccttgggcaacctgcaggccgacattcag
cgctgccagcagaagctggccgatctggaagccgagtgcagcctgaccctggccgagatc
aaggacatcaaccgtcgcatgtccatcggtgaagcgaaagctcgccgcgccaagaaggaa
atggtcgaggccaacctgcgtctggtcatctccatcgccaagaagtacaccaaccgcggc
ctgcagttcctcgacctgatccaggaaggcaacatcggcctgatgaaggcggtggacaag
ttcgaataccgtcgcggctacaagttctcgacctatgctacctggtggattcgccaggcg
atcacccgctcgatcgccgaccaggcgcgcaccatccgtattccggtgcacatgatcgag
accatcaacaagctcaaccgcatctcccgccagatgctgcaggaaatgggtcgcgagccc
actccggaagagctgggtgagcgcatggaaatgcccgaggacaagatccgtaaggtattg
aagatcgccaaagagccgatctccatggaaaccccgatcggcgacgacgaagattcgcac
ctgggcgacttcatcgaggacagcaccatgcagtccccgatcgacgtagcaacggtcgaa
agcctcaaggaagccactcgcgaagtgctggccggcctcactgcccgtgaagccaaggtc
ctgcgcatgcgcttcggtatcgacatgaacaccgaccacaccctcgaggaagtgggcaag
cagttcgatgtcacccgtgagcgtatccgccagatcgaagccaaggcgctgcgcaagctg
cgccacccgacgcgaagcgagcatctgcgctccttcctcgacgagtga
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