Ectopseudomonas chengduensis: QYM18_09830
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Entry
QYM18_09830 CDS
T09586
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pche
Ectopseudomonas chengduensis
Pathway
pche03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pche00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QYM18_09830
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pche03019
]
QYM18_09830
Enzymes [BR:
pche01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
QYM18_09830
Messenger RNA biogenesis [BR:
pche03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
QYM18_09830
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
WKC39368
LinkDB
All DBs
Position
complement(2089537..2091420)
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AA seq
627 aa
AA seq
DB search
MSFASLGLSEALVRAVESAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL
ERLFPGGHPDREQRHGPKQPRVLVLTPTRELAAQVHDSFKVYARDLKFVSACIFGGVGMN
PQVQALAKGVDVLVACPGRLLDLANQKAIDLSHVEILVLDEADRMLDMGFIHDVKKVLAK
LPAQRQNLLFSATFSKDITDLAGKLLRNPERIEVTPPNTTVERIEQRVFHLASSHKRALL
AHLITQGAWEQVLVFTRTKHGANRLAEYLDKHGLPAVAIHGNKSQNARTKALADFKANQV
RILVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEEKL
LKSIERMTKQKIPDGDLLGFDASTVEAERPETREPRQPRGQKQAKAPNAQGGDKPKGERN
NGGRRDKGKDSGKEQKAKPQQQGQGQNRRGQQPRNQSRGAAPAVPPLPPDRDPEEFLDDE
IDNFGNRADYVPVQNKPQGRGRRSGGGSAGNGAAQGQGQRANSNNRQPRSNAGAPPGKNR
RQGGQGGQGRNGGGRGRPADGRITSLDRDELPRAEAAVRNPREKQPIIVHKGSRLDRFPS
AEQLDELSNSTRPRSEKPALLTRNREE
NT seq
1884 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttgcctccctcggtctctccgaggctctagtccgtgcggtcgagtccgccggc
tacacccaacccactccggtgcaacagcgggccattcccgccgtgttgcaaggtcgcgat
ctcatggtggcggcccagacgggtacaggtaagacgggcggtttcgccctgccgatcctc
gaacgcctgtttccgggcggtcatccggatcgcgaacaacgtcacggcccgaaacaaccg
cgcgtgctggtactgacacccacccgcgaactggccgctcaggtgcatgacagctttaag
gtctatgcccgagatttgaaattcgtcagcgcctgcatcttcggcggcgtcggcatgaac
ccgcaggtccaggccctggccaagggcgtcgacgtgctcgtggcctgccccgggcgcctg
ctcgacctggccaatcagaaagccatcgacctgtctcatgtcgaaatcctcgtgcttgat
gaagccgaccgcatgctcgacatgggcttcatccacgacgtcaagaaggttctggccaag
ctgccggcgcagcgccagaacctgctgttctcggcgaccttctccaaggacatcaccgac
ctggccggcaagctgctgcgcaaccccgagcgcattgaggtgacgccgccgaacaccacg
gtcgagcgcatcgaacagcgcgtgttccacctggcctccagccacaagcgcgccctgctc
gcccacctgatcacccagggcgcctgggaacaggtgctggtgttcacccgcaccaagcac
ggcgccaaccgcctcgccgaatacctcgacaaacacggcctgccggccgtcgcgatccac
ggcaacaagagccagaacgcgcgcaccaaggccctagccgacttcaaggcgaaccaggtg
cgcatcctggtggcaaccgatatcgccgcccgcggcctggatatcgaccaactgccgcac
gtggtcaacttcgagttgcccaacgtcgaggaagactacgtacaccgcatcggccgtact
ggccgtgccggccgtagcggcgaagccatctcgctggtggcgccggacgaagagaagctg
ctcaagagcatcgagcggatgaccaagcagaagatccccgacggcgatctgctgggcttc
gacgccagcaccgtcgaggccgagcgcccggaaacccgcgaaccgcgccagccacgcggg
cagaaacaagccaaggcgccgaatgcccagggcggtgacaagcccaagggcgaacgcaac
aacggtggtcgcagagacaagggcaaggacagcggcaaggagcagaaagccaagccgcaa
caacagggtcagggccagaaccgccgtggtcagcagccgcgcaaccagagtcgtggcgct
gcgccggctgttccaccattgcctccggaccgcgacccggaagagttcctcgacgacgaa
atcgataattttggcaaccgtgccgattacgtaccggtgcagaacaagccgcaaggtcgc
ggccgtcgctcaggcggtgggtcggctggcaatggcgctgctcagggccaaggccagaga
gccaacagcaacaacaggcagccccgcagcaacgctggcgccccccccggcaagaatcgt
cgtcaaggtggccagggtggtcagggccgtaacggcggtggtcgtggccgaccggcggac
ggtcgcatcacctcgctggatcgcgacgagctgccacgcgccgaagcggccgtgcgcaac
ccgcgcgaaaagcagccgatcatcgtgcacaagggctcgcgcctggatcgttttcccagc
gccgagcagctcgacgagttgagcaacagcactcgtccacgcagcgagaagccggcgctg
ctgacgcgtaaccgcgaagagtaa
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