Ectopseudomonas chengduensis: QYM18_15760
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Entry
QYM18_15760 CDS
T09586
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pche
Ectopseudomonas chengduensis
Pathway
pche03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pche00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
QYM18_15760 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pche03400
]
QYM18_15760 (mfd)
Enzymes [BR:
pche01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
QYM18_15760 (mfd)
DNA repair and recombination proteins [BR:
pche03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
QYM18_15760 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
ERCC3_RAD25_C
AroM
DUF7267
Motif
Other DBs
NCBI-ProteinID:
WKC35923
LinkDB
All DBs
Position
complement(3364575..3368012)
Genome browser
AA seq
1145 aa
AA seq
DB search
MSVLRLPSLPASAGKQQWGNLPGAALSLTIAEAASNAGRFTLVLTEGSQSAERLQEELAF
FAPDLPVLHFPDWETLPYDVFSPHQDIISQRIAALYRLPQLSRGILVVPITTALHRLAPK
RFLLGGSLVLDVGQKLDVEQMRGRLEAAGYRCVDTVYEHGEFAVRGALIDLFPMGSDTPY
RIDLFDDEIETLRTFDPETQRSVDKVESIRLLPAREFPLEKKAVTDFRGRFRERFDVDFR
RCPIYQDLSTGITPAGIEYYLPLFFEETDTLFDYLPGDTQVFSLPGIEKAAEHFWTDARS
RYEDRRVDPERPLLPPADIFLPVEDCFARLKSWPRVVVNQDDIEPGVGQTRFDARALPDL
AIQAKAGEPLAALRRFIEEYPGRVLFCAESAGRREVLLELLARLKLKPREVEGWPAFVAS
PERLNICIAPLDEGLLLDDLALIAESPLFGQRVMQRRRREKGREGGDNVIKNLTELREGA
PVVHIDHGVGRYLGLVTMEFDGQAAEFLALQYADEAKLYVPVASLHLIARYTGSDDALAP
LHRLGSEVWQKAKRKAAEQVRDVAAELLDIYARRAAREGFAFQDPALDYATFSAGFPFEE
TPDQQAAIDAVRADMLAGKPMDRLVCGDVGFGKTEVAMRAAFIAVHSGKQVAVLVPTTLL
AQQHYNSFRDRFADWPVKVEVMSRFKSAKEVGEAVQQLAEGKVDIVIGTHKLLQDDVKFH
NLGLAIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVAGMRDLSIIATPPA
RRLSVRTFVMESNKPTIKEALLRELLRGGQVYYLHNDVKTIEKCASELAELVPEARIGIG
HGQMRERDLEQVMSDFYHKRFNVLVASTIIETGIDVPSANTIIIDRADKFGLAQLHQLRG
RVGRSHHQAYAYLLTPPRKQMTPDAEKRLEAIAGAQDLGAGFVLATHDLEIRGAGELLGD
GQSGQIQAVGFTLYMEMLERAVKAIQKGEQPNLDQPLGGGPEINLRVPALIPEDYLPDVH
SRLILYKRIANASDEDGLKELQVEMIDRFGLLPEPTKNLMRLTLLKLQADKLGISKVDAG
PQGGRIEFAAETCVDPLTLIKLIQAQPKRYKFEGATVFKIQVPMERAEERFNTLEALLER
LAPTT
NT seq
3438 nt
NT seq
+upstream
nt +downstream
nt
gtgtccgtactgcgtcttccgtctctaccggccagcgccggcaaacaacagtggggtaac
ctgcccggcgccgcgctgtccctgactatcgccgaagcggccagcaatgccggacgcttc
acgctggtactcaccgaaggcagccagagcgccgagcggctgcaggaagaactggcgttc
ttcgcccccgacctgccagtgctgcactttcccgactgggaaaccctgccctacgatgtc
ttctcgccgcaccaggacatcatctcgcaacgcatcgcagcactctatcgcctgccgcag
ctgagccgcggcatcctcgtagtgccgatcaccaccgccctacaccgcctggcgccgaag
cgctttctgctgggtggcagcctggtgctggatgtcggtcagaaactcgatgtggagcag
atgcgcggccgcttggaggccgccggctaccgctgcgtcgacaccgtttacgaacacggc
gagttcgccgtgcgcggcgcattgatcgatctgttcccgatgggcagtgacacgccctac
cgcatcgacctgttcgacgacgaaatcgaaaccctgcgcaccttcgaccccgagacccag
cgctcggtggacaaggtcgagtcgatccgtctgttgccggcgcgtgaatttccgttggaa
aagaaagctgtcaccgatttccgcgggcgtttccgcgagcgcttcgacgtggatttccgt
cgctgcccgatctatcaggacctttccaccggcatcacccccgccggcatcgagtactac
ctgccgctgttcttcgaagagacagacaccctgttcgactacctgccaggcgacacccag
gtattttccctgcccggcatcgaaaaggctgccgagcatttctggacagatgcgcggagc
cgctatgaggaccgccgagtcgacccggagcgcccgctactgccacctgccgacattttc
ctgccggtcgaggactgcttcgcccgtctgaagagctggccgcgcgtagtggtcaatcag
gacgatatcgagcccggcgtcggccagacccgttttgacgcacgcgccctgcccgacctg
gcgattcaggccaaggccggcgagccgctggcggcgttgcgccgctttatcgaagaatat
ccaggccgcgtgctgttctgcgccgaatcagccggtcgccgcgaagtgctgctggaactg
ctcgcccgcctcaagctcaaaccccgggaagtcgagggctggccggccttcgtcgccagc
cctgaacgcctcaacatctgcatcgcaccactggatgaaggcctgctgctcgacgacctg
gcactgatcgccgaaagcccgctgttcggccagcgcgtgatgcagcgtcgccgccgcgaa
aaaggccgagaaggcggcgacaacgtgatcaagaacctcaccgagctgcgcgaaggcgcg
ccggtggtgcatatcgatcacggcgtcggccgctacctgggcctggtgaccatggagttc
gacggccaggccgccgaattcctcgccctgcagtatgccgacgaagccaagctctacgta
cccgtggccagcctgcacctgatcgcccgctacaccggcagtgacgatgccctggcgccg
ctgcatcgcctcggttcggaggtctggcagaaggccaagcgcaaggcggccgagcaggtg
cgcgatgttgctgccgagctgctcgatatctacgcccgccgcgccgctcgcgaaggtttc
gccttccaggacccggcactggactacgccactttcagcgccggcttccccttcgaggaa
accccggatcagcaggccgccatcgatgccgtgcgcgccgacatgctggctggcaagccg
atggatcgcctggtctgcggcgacgtcggcttcggcaagaccgaggtggccatgcgcgcc
gccttcatcgccgtgcacagcggcaagcaggtcgccgtgctggtgcccaccaccctgctc
gcccagcagcactacaacagcttccgcgaccgcttcgccgactggccggtgaaggtcgag
gtgatgagccgcttcaagagcgccaaggaagtcggcgaggccgtgcagcaactggccgaa
ggcaaggtggatatcgtcatcggcacgcacaagctgctgcaggacgacgtcaagttccac
aacctcggcctggccatcatcgacgaggaacaccgcttcggcgtgcgccagaaggaacag
ctcaaggccctgcgcagcgaggtcgacatcctcaccctgactgccacgccgatcccgcgc
acgctgaacatggccgtggccggcatgcgcgacctatcaatcatcgccacgccaccagcg
cggcgtctgtcggtgcgcaccttcgtcatggaaagcaacaagccgaccatcaaggaagcg
ctgctgcgcgagctgctgcgcggcggccaggtctactacctgcacaacgatgtaaagacc
atcgagaaatgcgccagtgagctggccgagctggtgcccgaggcgcgtatcggcataggt
cacggacagatgcgcgaacgcgatctcgagcaggtgatgagcgacttctaccacaagcgc
ttcaacgtactggtggcctcgaccatcatcgagaccggtatcgacgtgcctagcgccaac
accatcatcatcgaccgcgccgacaagttcggcctggcccaactgcaccagttgcgcggc
cgtgtcggtcgtagccaccaccaggcctacgcctacctgctgacgccaccgcgcaagcag
atgaccccggatgcggaaaaacgcctggaggccatcgcgggcgctcaggatctcggcgcc
ggcttcgtcctcgctacccatgacctggaaatccgcggcgctggcgaactgcttggcgat
ggccagagcgggcagattcaggcggtcggcttcaccctctacatggaaatgctcgaacgc
gcggtcaaggctatccagaaaggcgaacagccgaacctcgaccaaccattgggcggcggt
ccggagatcaacctgcgtgtaccggcgctgattcccgaggactacctgcccgatgtgcac
agccgcctgatcctctacaaacgcatcgccaacgccagcgacgaggacggcctgaaggag
cttcaggtagagatgatcgaccgtttcggcctgctgccggagccgaccaagaacctcatg
cgcctgaccctgctcaagctgcaggccgacaagctcggcatcagcaaggtcgacgccggc
ccgcagggtggacgaatcgagttcgccgcggaaacctgcgtcgacccgctgaccctgatc
aaactgatccaggctcagccaaaacgctacaagttcgaaggcgccaccgtcttcaagatc
caggtgccgatggagcgcgcggaagaacgcttcaacaccctggaagccctgctcgagcgc
ctcgcgcccaccacctga
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integrated database retrieval system
