Pseudomonas chengduensis: QYM18_15890
Help
Entry
QYM18_15890 CDS
T09586
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pche
Pseudomonas chengduensis
Pathway
pche03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pche00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QYM18_15890 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pche03019
]
QYM18_15890 (rne)
03009 Ribosome biogenesis [BR:
pche03009
]
QYM18_15890 (rne)
Enzymes [BR:
pche01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
QYM18_15890 (rne)
Messenger RNA biogenesis [BR:
pche03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
QYM18_15890 (rne)
Ribosome biogenesis [BR:
pche03009
]
Prokaryotic type
rRNA processing factors
QYM18_15890 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DUF4901
TcdA_TcdB
Motif
Other DBs
NCBI-ProteinID:
WKC35948
LinkDB
All DBs
Position
complement(3391471..3394527)
Genome browser
AA seq
1018 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQKLYDLDIESGAREQKKANIYKGRITRVEPSLEAAFVDF
GSERHGFLPLKEISREYFSKAPEGGRVNIKDVLKEGQEVIVQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLNAPADMGLIVRTAGLGRSSEEMQ
WDLDYLLQLWSAIKEASTSRPAPFLIYQESNVIIRAIRDYLRQDIGEVLVDSVEAQEEAL
SFIQQVMPQYASKIKLYEDSVPLFNRFQIESQIETAFQREVKLPSGGSIVIDPTEALVSI
DINSARATKGSDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEK
VREALEADRARVQVGRISRFGLLEMSRQRLRPSLGETSGIVCPRCNGQGIIRDVESLSLA
ILRLIEEEALKDRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIVILPNDHLETPH
FEVQRLRDDSPEALSGQTSYEIAATAETEETAAQPAAATRTLVRQEAAIKAAPRSSAPVA
AEPQAPLAPTKATEPSLFKGLVKSLVSLFAGKEEEAKPAVVEKKSNERPPREERRNGRQQ
SRNRGGRRDEERKPREERAPREERQAREPREERQPREERQPREERAPREPREGQENRRER
KPREERAPREERVRELREPLDADAGNEQREERAERQPRGERQERQRQPREERQPRAEQTE
ALQDEALPNEEQLQDDEQDSNDGERPRRRSRGQRRRSNRRERQRDADGNLIESAENSEAA
GNDAQAVTPVAVATAAAVVAESVDSSEAVASEAPVSEAPVVEAPAVQVEEAPAAQPVEAQ
AEAAVSEVVEAAPVAEKAVEAEPAAAEAPVVVEAPAAEPIAQAEPTVEVAQEPAPAPVEQ
APAAAAVPANATGRAPNDPREVRRRQREAERLAREAAQAAAAAPAVEAAPAVDAAPVAEV
SVPAEAEAAVVETAPVVEPVAEAEATSVVSEQSVSEAVEQAQPEEETQADKEEVKPQA
NT seq
3057 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctaattaacgcgactcagcctgaagagttgcgtgttgccctggtagat
ggccaaaaactctacgacctggacatcgagtccggcgcccgtgaacaaaaaaaggccaac
atctacaaaggccgcatcacccgcgttgaacccagcctcgaagccgctttcgtcgacttc
ggctccgaacgccacggcttcctccccctcaaagaaatctcccgcgaatacttctccaaa
gcccctgaaggcggccgcgtcaacattaaggacgtgctcaaggaaggccaggaagtcatc
gtccaggtcgagaaagaagagcgcggcaacaagggcgcagccctgaccaccttcatcagc
ctggccggtcgttacctggtgctgatgccgaacaacccgcgtgccggcggcatcagccgc
cgcatcgaaggtgaagagcgcaacgaactgcgtgaagcgctgaatggcctcaacgctccg
gccgacatgggcctgatcgtgcgcactgccggcctgggccgctccagcgaagaaatgcag
tgggacctcgactacctgctgcaactgtggagcgccattaaagaagcctccaccagccgc
cctgccccgttcctgatctatcaggaatccaatgtcatcatccgcgccatccgcgactac
ctgcgccaggatatcggcgaagtgctggtcgacagcgtcgaagcccaagaagaagccctc
tccttcatccagcaggtgatgccgcagtacgccagcaagatcaagctgtatgaagacagc
gtgccgctgttcaaccgcttccagatcgaaagccagatcgaaaccgccttccagcgtgaa
gtgaagctgccgtccggtggttccatcgtcatcgacccaaccgaggccctggtttccatc
gacatcaactcggcgcgcgccaccaagggcagcgacatcgaggaaaccgcgctgcagacc
aacctggaagcggccgaagaaatcgcccgccagctgcgtctgcgcgacatcggcggtctg
atcgtcatcgatttcatcgacatgaccccggccaagaaccagcgcgccgtcgaagagaag
gtgcgtgaagccctggaagccgaccgcgcccgcgttcaggtcggccgcatctcgcgcttc
ggcctgctggaaatgtcccgtcagcgcctgcgtccgtccctcggcgagaccagcggcatc
gtctgcccacgctgcaacggccaaggtatcatccgtgacgtcgaatccctgtcgctggca
atcctgcgcctgatcgaagaagaagcgctgaaggatcgcaccgccgaagtccgcgctcag
gtaccgatcccggtcgccgccttcctgctcaacgagaagcgcaactcgatcaccaagatc
gaactgcgcacccgtgcgcgtatcgtgatcctgccgaacgatcacctggaaaccccgcat
ttcgaagtgcagcgtctgcgtgacgacagcccggaagccctgagcggccagaccagctac
gaaatcgccgccactgcggaaaccgaagaaaccgccgcccagccggccgccgccacgcgc
acactggttcgccaggaagccgcgatcaaggccgcaccgcgcagcagcgccccggtcgct
gccgagccgcaagcaccgctggctccgaccaaagcgactgagccgagcctgttcaagggc
ctggtgaagtctctggtcagcctgttcgccggcaaggaagaagaagccaaacctgcagta
gtcgagaagaagagcaacgagcgtccgccgcgcgaagagcgtcgcaacggtcgtcagcag
agccgcaaccgtggcggtcgccgcgacgaggagcgcaagcctcgcgaagagcgcgccccg
cgtgaagagcgtcaggcccgtgaaccgcgtgaagaacgccaacctcgcgaagagcgtcaa
ccgcgtgaagagcgcgcccctcgcgagccgcgcgaaggtcaggaaaatcgccgtgagcgc
aagccgcgcgaagagcgtgccccgcgtgaagagcgagtgcgtgaactgcgtgaaccactc
gatgccgatgctggtaacgagcaacgcgaagagcgtgccgagcgccagccgcgcggtgaa
cgtcaggagcgtcagcgtcaaccgcgtgaagagcgtcagccgcgtgccgagcaaaccgag
gccctgcaggacgaagcactgccgaacgaagagcaactgcaggacgacgagcaggacagc
aacgatggcgagcgcccgcgtcgccgttcccgcggtcagcgtcgtcgcagcaatcgtcgc
gaacgtcagcgtgatgccgatggcaacctgatcgagagcgccgagaacagcgaagctgcc
ggtaacgacgctcaggccgtcaccccggttgccgtggctactgccgccgccgtggttgca
gaaagcgtcgacagcagcgaagccgttgccagcgaggctccggtcagcgaagccccggtc
gtcgaagcaccggctgttcaggttgaagaagcccctgctgctcaaccggtcgaggcgcaa
gccgaggctgctgtgagtgaagtggtcgaagccgctccggtcgcagagaaagcagttgag
gcagaaccggccgcagccgaagcccctgtcgtcgtggaagctcccgctgccgaaccgatc
gctcaagctgagccgactgtcgaagtcgcccaggagcctgctccggcaccggtcgagcaa
gcacctgctgccgcagcggttccggccaatgccactggccgtgcgccgaacgacccgcgc
gaagtgcgtcgtcgtcagcgtgaagctgagcgcctggcgcgcgaagctgcacaggccgcc
gctgcagccccggctgtagaggctgccccagcagtcgacgccgctccggtcgctgaagta
agcgtcccggcagaagccgaagccgccgtagtcgaaacagctcctgtagtcgagccggtc
gctgaagccgaagccacctctgtcgtcagcgagcaaagcgtgagcgaagcggtagagcaa
gcgcagccggaagaagagacgcaagccgacaaggaggaggtcaagcctcaggcttga
DBGET
integrated database retrieval system
