Ectopseudomonas chengduensis: QYM18_16840
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Entry
QYM18_16840 CDS
T09586
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
pche
Ectopseudomonas chengduensis
Brite
KEGG Orthology (KO) [BR:
pche00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pche03016
]
QYM18_16840 (rnd)
Enzymes [BR:
pche01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
QYM18_16840 (rnd)
Transfer RNA biogenesis [BR:
pche03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
QYM18_16840 (rnd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
RNAseD_HRDC_C
Motif
Other DBs
NCBI-ProteinID:
WKC36124
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All DBs
Position
3578567..3579700
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AA seq
377 aa
AA seq
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MANDIHWILDDASLAEHCAAWQALPFVALDTEFMRVDTFYPIAGLLQVSGGDGAYLIDPL
RISDWRPFAALLEAPGVVKVLHSCSEDLEVFLRLTGSLPAPLFDTQLAAGYLNLGFSMGY
SRLVQALLDIELPKGETRSDWLQRPLSELQVRYAAEDVSHLVEVYRALMARLAPQKVEWI
LEDGAELVANLGREVVPEDAWRDAKLAWKLSRQQQAVLRALCAWREREARARNQPRNRIL
REHSLWPLARTQPDNLVALARIEDMHPKTVRQDGETLLQLIREAAALPPEQWPEALPEPL
PIEASALLKKLRAVGQREGERLDIVPELMLRKKTLEALLKSGYPNGPYQLPDSLRGWRRE
LMGQALLDCLAAEGESA
NT seq
1134 nt
NT seq
+upstream
nt +downstream
nt
gtggctaacgacattcactggattctcgacgacgccagcctggccgagcattgcgctgcc
tggcaggcgctgcccttcgtcgcgttggacaccgagttcatgcgcgtcgacaccttctat
cccatcgccgggttgctgcaggtcagcggtggcgacggcgcctacctgatcgacccgctg
cgcatcagcgactggcggccgttcgccgcgctgctcgaagcgccgggtgtggtcaaggtg
ctgcattcgtgcagtgaggacctggaggtctttctacgcctgaccggcagcctgccggcg
ccgctgttcgacacgcaattagcggctggttacctcaatctcggtttctccatgggctac
tcgcgcctggtgcaggcgctgctcgatatcgagctgcccaagggcgaaacccgctccgat
tggctgcagcggccactgtccgaactgcaggtgcgttacgccgccgaggacgtctcgcat
ctcgtcgaggtgtatcgcgccctgatggcccgcctggcgccgcagaaggtcgagtggatt
ctggaggacggtgccgagctggtcgccaatcttggtcgtgaagtcgttccggaagatgcc
tggcgcgatgccaagctggcctggaaactctcgcgccagcagcaggccgtgttgcgcgcg
ctgtgcgcctggcgcgagcgcgaggcgcgcgcgcgcaaccagccacgcaatcgcatcctg
cgcgagcattcgttgtggccgctggcccgtacccagccagataacctggtggcgctggcg
cgcatcgaggacatgcacccgaaaaccgtgcgtcaggacggggagacgctgctgcagctg
attcgcgaggctgcggcgctgccgcccgaacaatggcccgaagctttgcccgaaccgctg
ccaatcgaagcctctgcgctgttgaagaagctgcgcgccgtcggccagcgtgagggcgag
cgcctggatatcgtgcccgagctgatgctgcgtaagaaaaccctggaagccttgctgaaa
agcggctatcccaatggtccttatcaattgcccgactccctgcgcggctggcgccgggag
ttgatggggcaggcgctgcttgactgcctggccgctgaaggagagtccgcgtga
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