Paenibacillus chitinolyticus: PC41400_10025
Help
Entry
PC41400_10025 CDS
T06610
Name
(GenBank) ATP-dependent helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pchi
Paenibacillus chitinolyticus
Pathway
pchi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pchi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PC41400_10025
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pchi03019
]
PC41400_10025
03009 Ribosome biogenesis [BR:
pchi03009
]
PC41400_10025
Enzymes [BR:
pchi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PC41400_10025
Messenger RNA biogenesis [BR:
pchi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PC41400_10025
Ribosome biogenesis [BR:
pchi03009
]
Prokaryotic type
rRNA helicases
PC41400_10025
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
QAV17986
UniProt:
A0A410WU24
LinkDB
All DBs
Position
2175088..2176695
Genome browser
AA seq
535 aa
AA seq
DB search
MKNFSEFDLDAKVIKAITEMGFEESTPIQEKTIPLAIEGHDLIGQAQTGTGKTAAFGIPL
VSKIEPSEDKIVALIMCPTRELAIQVAEEVSKLGRFKGIRSLPIYGGQDIGKQIRALKKR
PQIIIGTPGRLLDHINRKTIKLEDVKTVVLDEADEMLDMGFMDDIQSILSLVPAERHTML
FSATMPPNIQKLAQQFLTNPQHVSVIPKHVSAPLIDQAYVEVHEKQKFEALSRLIDMESP
ELAIVFGRTKRRVDELAEALQKRGYAAEGLHGDLSQNQRDNVMRKFRDGSIEVLVATDVA
ARGLDVSGVTHVVNFDLPQDPESYVHRIGRTGRAGKEGTAWTFVTPREIDHLHFIEKVTR
HRIPKKPMPSPAEAMEGKQKVTAERIINLLQEDKHNEFKGVAIQLLEEYDSVNLLAAALQ
LLTGGEKKEVSVELTPEDPIRAKKRRVDVRSSGRKFNYGSDRRGDGRSGGGYGSRSGQGG
SRYGSSSSRGRDGGRDYRDRDRDSRSGGGYGSRSGGSDYNRDRSSSTRRSEDSNA
NT seq
1608 nt
NT seq
+upstream
nt +downstream
nt
ttgaaaaatttttcagaatttgatttagatgcaaaagtaatcaaagctattacagaaatg
ggtttcgaagaatcgaccccgattcaggagaaaacgattccgcttgcgattgaaggacac
gatctgatcggccaggcgcagaccggtacgggtaaaacggccgctttcggtattcctctc
gtaagcaaaatcgaaccaagcgaagacaagatcgtcgcacttatcatgtgcccgacacgc
gaacttgccatccaggttgcggaagaagtaagcaaactgggacgtttcaaaggcatccgc
tccctgccgatctacggcggacaagatatcggtaagcaaatccgcgcattgaagaaaaga
cctcagatcatcatcggtacgccgggacgtctgcttgaccacatcaaccgtaaaacgatc
aagctcgaagacgttaaaaccgtcgttctcgacgaagcggatgaaatgctcgacatgggc
ttcatggatgacatccagtccatcttgagccttgtaccggcagaacgccacaccatgctc
ttctcggcaaccatgcctcctaacattcagaaactggctcaacagttcctgacgaaccct
cagcatgtatcggtcattcctaagcacgtgagcgctccgcttatcgatcaggcttatgtc
gaagtgcatgagaagcagaaattcgaagcgcttagccgtctcatcgacatggaatccccg
gaactggcgatcgtgttcggacgtacgaagcgccgtgtagacgagctggcggaagccctg
cagaagcgcggttatgccgcggaaggcctgcacggcgacttgtcccagaatcagcgtgac
aacgtgatgcgcaaattccgcgacggcagcatcgaagtgcttgtcgctacggacgtggcg
gcgcgcggtctcgacgtttccggcgtcacgcacgtcgttaacttcgatcttccgcaggat
ccggaaagctacgttcaccggatcggccgtacgggccgcgcgggcaaagaaggaacggct
tggacgttcgtaacgccacgtgagatcgatcacctgcacttcatcgagaaagtaacccgt
caccgcattcctaagaagcctatgccgagcccggccgaggctatggaaggcaagcagaag
gtaacggctgaacgcatcatcaacctgcttcaagaagacaagcacaacgagttcaaaggc
gtagctatccagcttcttgaggaatacgattccgtcaacctgctggcagcggcacttcag
cttcttaccggcggtgagaagaaggaagtatccgtcgagctgactccggaagatccgatc
cgtgcgaagaaacgccgcgtcgatgttcgcagctccggacgcaagttcaactatggcagc
gaccgcagaggcgacggccgttccggcggaggctatggctcccgctccggccaaggcgga
tcgcgctacggttcttcttcctcccgcggaagagacggcggacgcgattaccgcgaccgt
gaccgtgacagccgttccggtggaggctacggctcccgcagcggcggttccgattacaat
cgtgaccgttccagcagcactcgccgcagtgaagattccaacgcttaa
DBGET
integrated database retrieval system
