Stutzerimonas chloritidismutans: LLJ08_05865
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Entry
LLJ08_05865 CDS
T07923
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
pchl
Stutzerimonas chloritidismutans
Brite
KEGG Orthology (KO) [BR:
pchl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pchl03019
]
LLJ08_05865 (hrpA)
Enzymes [BR:
pchl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
LLJ08_05865 (hrpA)
Messenger RNA biogenesis [BR:
pchl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
LLJ08_05865 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
nSTAND3
AAA_19
AAA_25
T2SSE
NACHT
ABC_tran
DUF1409
Motif
Other DBs
NCBI-ProteinID:
UEG62664
LinkDB
All DBs
Position
1273327..1277409
Genome browser
AA seq
1360 aa
AA seq
DB search
MTDATPAIDTLLKNLDQALFADRHRLRRQLHELRKQPDEAKLAQWLERFQASAAKVEARR
QSVPRIRYDDSLPIAAKRDEIKAALEKHQVLVIAGETGSGKTTQLPKICLEIGRGVHGLI
GHTQPRRLAARSVATRVAEEIGTPLGELVGYQVRFEDQSKDSSLIKLMTDGILLAETQHD
RFLERYDTIIVDEAHERSLNIDFLLGFLKTLLPRRPDLKVIITSATIDLQRFSEHFDGAP
IVEVSGRTYPVETWYRPLAAEIDEDGNRVEDDLTVDQGILAALDEIAAHEQSVGKRPGDV
LVFLPGEREIRDAAEVLRKANLKFTEVLPLYARLTPAEQQKIFQPRPGRKIVLATNVAET
SLTVPGIRYVIDSGTARISRYSYRAKVQRLPIEAVSQASANQRKGRCGRVEPGICIRLYS
EEDFLGRPEFTDPEILRTNLAAVILQMLHLRLGDIQDFPFIESPDGKAISDGFNLLQELS
AVNRENQLTPLGRQLARLPIDPRLGRMLLEAAQQGSLAEVLIVASALSVQDVRERPADRQ
QAADQAHAQWKDPDSDFAALINIWRGFEEKRQELGSNPLRTWCRKNFLNYLRLREWRDAH
RQLTLIARELKLGSGRSVDGSGQPPRADKARRVEDGEASSTRPAGASAQPVPTKDTKVNV
ILRQQAEASDEAQRAKSYAAVHKAILAGLLSQVGNKTEEGDFLGARQRRFWVHPSSVIGR
KKPNWLMAAELVETTKLFARMVAKIEPDWIEPLAGHLIKKNHFEPHWEKKRGQVVAYEQV
TLYGMIVVGRRPVHYGPIDPPAARELFIREGLVRGEMHSRARALNANHELLERLDELEAK
TRRRDILADEETLFDYYDARLPADIYQTASFENWYKRESQKDPQLLIMREEDVLAREASE
VTAAQYPDHLSIGELQLPLEYHFEPNHPRDGVTLRVPAPLLPQLRSERLDWLVPGLLETK
AVALVRNLPKALRKNFVPVPDFVGAALAKITFGEGALPEALGRELLRMTGARVSDDAWAE
AAAGLESHLKMNIEVVDARGKFLGEGRDLAELTARFAEASQAALAPQQQKAEQKPVEAKG
FAQVAEKAQAKMAGLSMTVYPALVEEAGVVKEGRFPTQAEAEWQHRRALQRLLLQQLAEP
AKYLRNKLPGLTELGLLYRDMGKVDGLVEDILLASLDSCILDGEAQLPRDGAALASLAER
KRGDWTAHAERLARLTLEILKHWHGLQKRFKGKIDLAQAVALNDIKAQLGNLVYPGFVRE
TPAEWLKEYPRYLKAIEQRFEKIGAQLQRDRVWSGELAGYWEQYQTRLKKHLQEGKRDAE
LALYRWMLEEYRVSLWAQQLGTRMAVSDKRLNKQWSQVEP
NT seq
4083 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacgcaacgcccgctatcgataccctgctgaagaatctcgaccaggccctgttc
gctgatcgccaccgcctgcgccggcagctgcacgagctgagaaagcagccggacgaggcc
aaactggcccagtggctggagcgttttcaggcatccgccgccaaggtcgaggcgcgcagg
cagagcgtgccgcgcattcgctacgacgatagcctgccaatcgccgccaagcgcgacgag
atcaaggccgcgctggaaaagcatcaggtgctggtaattgccggtgagaccggctccggc
aagaccacccagctaccgaagatctgcctggagatcggccgtggcgtgcacgggctgatc
ggccatactcagccgcgccggcttgcggcacgcagcgtcgccactcgcgtggccgaggaa
atcggcacgccactgggtgagctggtgggttatcaggtgcgtttcgaggatcagagcaag
gacagctcgctgatcaagctgatgaccgatggcatcctgctggccgagacgcagcacgac
cgcttcctcgagcgttacgacaccatcatcgtcgacgaggcccacgagcgttcgctgaac
atcgacttcctgctcggttttctcaagaccctgctgccgcggcggccggatctgaaggtc
atcatcacttcggcgaccatcgacctgcagcgcttttcggagcatttcgacggtgcgccc
atcgtcgaggtctccgggcgtacctacccggtggagacctggtatcggccactggcggcc
gagatcgacgaggacggcaaccgggtggaggacgacctgaccgtcgaccagggcatcctc
gccgcgctggacgagatcgccgcccacgagcagagcgtcggcaagcgccccggcgatgtg
ctggtgttcctgcccggtgaacgcgagattcgcgacgcggccgaggtgctgcgcaaggcc
aatctgaagttcaccgaggtgctgccgctgtacgcgcggctgacgccggccgagcagcag
aagatcttccagccgcgaccggggcgcaagatcgtgctggccaccaacgtcgccgagacc
tcgctgaccgtgcccggtatccgctacgtgatcgattccggtaccgcgcgcatcagccgc
tacagctaccgcgccaaggttcagcggctgccgatcgaggcggtgtcccaggccagcgcc
aaccagcgcaaggggcgctgcgggcgggtcgagccgggtatctgcattcggctttacagc
gaggaagacttcctcggccggccggaattcaccgatccggagatcctgcgcaccaacctc
gccgcggtgatcctgcagatgctgcatctgcgcctgggcgacattcaggatttccccttt
atcgagtcgccggatggcaaggccatcagcgacggcttcaacctgttgcaggagctctcg
gcggtcaatcgcgagaaccagctgaccccgctgggccgccagctggcgcgcctgccgatc
gacccgcgactgggtcgcatgcttctcgaagccgcacagcagggcagcctggccgaagtc
ctgatcgttgccagcgcactctcggtgcaggacgtgcgtgagcgcccggctgatcgccag
caggcggccgatcaggcccatgcacaatggaaagacccggattcggacttcgccgcgctg
atcaatatctggcgcgggtttgaggaaaaacgccaggagctgggctccaacccactgcgc
acctggtgccggaagaacttcctcaactatctgcgtctgcgcgagtggcgtgacgcccat
cgccagctgaccctgattgcccgagaactcaaacttggttcgggcaggtcggtggatggc
tccggccaaccaccgcgtgccgataaggcacgtagggtggaagacggcgaagcctcttcc
acgcgtccggccggggccagcgcccaacccgtaccgaccaaggacaccaaggtcaacgtc
atcctccgccagcaggccgaagccagcgatgaggcgcagagggccaagagctacgcggcg
gtgcacaaggcgatcctcgctggcctgctcagccaggttggcaacaagaccgaggagggc
gacttcctcggcgcgcgccagcggcgcttctgggtacacccctccagcgtgatcggccgc
aagaagcccaactggctgatggccgctgaactcgtggaaactaccaagctgttcgcgcgc
atggtcgccaagattgagcccgactggatcgagccactggccggccacctgatcaagaag
aaccacttcgagccgcactgggagaagaagcgcggacaggtggtggcctacgagcaggtg
acgctttacggcatgatcgtcgtcggccgtcggcccgtgcattacggccccatcgatccg
cccgcggcccgcgagctgttcatccgcgaagggctggtgcgcggcgagatgcacagccgc
gcccgcgcgctcaatgccaatcatgagctgctcgaacgcctcgacgaactggaagccaag
acgcgccgccgcgacatcctcgccgacgaggaaaccctgttcgactactacgatgcgcgg
ctgccggcggacatctaccagaccgccagcttcgagaactggtacaagcgcgaaagccag
aaagacccgcagctgctgatcatgcgcgaggaagacgtgctcgcccgcgaggccagcgaa
gtcaccgccgcgcagtacccggaccacctgagtatcggcgagctgcagttgccgctggaa
taccatttcgagcccaaccacccgcgcgatggcgtgaccttgcgcgtcccggcgccgctg
ttgccgcaattgcgcagcgagcggctcgactggctggtaccggggctgctggaaacgaag
gcggtggcgctggtgcgcaacctgcccaaggcactgcgcaagaacttcgtaccggtgccg
gatttcgtcggcgccgcgctggccaagatcaccttcggtgaaggcgcgctgccggaggcg
ctgggccgtgaactgctgcgcatgactggtgcacgcgtatcggacgacgcctgggccgag
gcggcagccggtctggaaagccatctgaagatgaacatcgaggtggtcgacgcccgcggc
aagttcctcggtgaggggcgtgatctggctgaactcaccgcgcgcttcgccgaggccagc
caggccgccctggcgccgcagcagcagaaggccgaacagaagccggtcgaagccaagggt
tttgcccaggtcgcagaaaaggcccaggcgaagatggccgggctgtcgatgaccgtctac
ccggcgctggtggaagaggcaggggtggtcaaggaagggcgctttccaacccaggccgag
gccgagtggcaacaccgccgcgccctgcagcgcctgttgttgcaacagctggcggagccg
gccaagtacctgcgcaacaagctgccgggccttaccgagctgggcctgctctaccgcgac
atgggcaaggtcgatgggctggtcgaggacatcctgctggccagcctcgacagctgcatc
ctcgacggcgaagcccagctgccgcgtgatggcgccgcgctggcgtcactggccgaacgc
aagcgcggcgactggactgcgcatgccgagcgcctcgcacgtctgacactggaaatcctc
aagcactggcacggcctgcagaagcgcttcaagggcaagatcgatctggcccaggcggtg
gcgctcaatgacatcaaggcgcagttgggcaacctggtctatccgggctttgttcgcgaa
acgcctgccgagtggctgaaggagtacccccgctacctcaaggccatcgagcaacgcttc
gagaagatcggtgcgcagctgcagcgtgatcgcgtctggtccggcgaactggccggctac
tgggagcagtaccagacacgcctgaagaagcacttgcaggaaggcaagcgcgatgccgag
ctggcactgtatcgctggatgctcgaggaatatcgcgtctcgctctgggcacagcagctt
ggcaccaggatggcggtttcggacaagcgcctgaacaagcagtggagccaggtcgagccc
tga
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