Stutzerimonas chloritidismutans: LLJ08_07305
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Entry
LLJ08_07305 CDS
T07923
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pchl
Stutzerimonas chloritidismutans
Pathway
pchl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pchl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LLJ08_07305 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pchl03400
]
LLJ08_07305 (mfd)
Enzymes [BR:
pchl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LLJ08_07305 (mfd)
DNA repair and recombination proteins [BR:
pchl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LLJ08_07305 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
SNF2-rel_dom
Cas3-like_C_2
UB2H
ERCC3_RAD25_C
AroM
AAA_22
Motif
Other DBs
NCBI-ProteinID:
UEG62932
LinkDB
All DBs
Position
complement(1562796..1566242)
Genome browser
AA seq
1148 aa
AA seq
DB search
MSVLRLPPLPAASGKQHWGNLPGAALSLAIAEAASNAKRFTLLLTADSQSAERLQEELAF
FAPQLAVLHFPDWETLPYDIFSPHQDIVSQRIAALYQLPELSHGVLVVPITTALHRLAPK
RFLLGSSLVLDVGQKLDVEQMRLRLEAAGYRCVDTVYEHGEFAVRGALIDLFPMGSPLPY
RIDLFDDEIETLRTFDPENQRSIDKVESIRLLPAREFPLKKEAVTGFRARFRERFDVDFR
RCPIYQDLSTGITPAGIEYYLPLFYEETATLFDYLPEDSQVFSLPGIEQAAEQFWSDVRN
RYEERRVDPERPLLPPAELFMPVEDCFARLKLWPRVVASQQDVEPGIGRERFTAQALPEL
AIEAKASEPLGKLRRFLDEYAGRVLFTAESAGRREVLLELLARLKLRPQEVEGWEEFLAS
QERLAITIAPLDEGLQLDDVALVAESPLFGQRVMQRRRREKSRDGGENVIKNLTELREGS
PVVHIDHGVGRYQGLVTLEIEGQAQEFLLLQYAEDAKLYVPVASLHLIARYTGSDDALAP
LHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFKDPQVDYETFAAGFPFEE
TPDQQAAIDAVREDLLSAKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVGVLVPTTLL
AQQHYNSFRDRFADWPVRVEVMSRFKSAKEVQSAIAELAEGKIDILIGTHKLLQDDVKFS
NLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMSIAGMRDLSIIATPPA
RRLSVRTFVMEQQNTVIKEALLRELLRGGQVYYLHNDVKTIEKCAADLQALVPEARVAIG
HGQMRERDLEQVMSDFYHKRFNVLVASTIIETGIDVPSANTIIIERADKFGLAQLHQLRG
RVGRSHHQAYAYLLTPTRKAMTDDAQKRLEAIANAQDLGAGFVLATHDLEIRGAGELLGE
GQSGQIQAVGFTLYMEMLERAVKAIRKGEQPNLEQPLGGGPEINLRLAALIPEDYLPDVH
ARLILYKRIANAADEDGLKELQVEMIDRFGLLPEPTKNLVRLTLLKLQAEKLGITKIDAG
PQGGRIEFSADTSVDPMVLIKLIQSQPNRYKFEGATLFKFQVPMERPEERFNTLEALLER
LAPNEQGS
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
gtgtccgtcttgcgccttccccccctgcctgccgccagcggcaagcaacattggggcaat
cttccaggagctgcgctaagcctggcgattgccgaagcagccagcaacgccaagcgcttc
acgctcctgctcactgccgacagccaaagcgccgagcgcctgcaggaagaactcgccttc
ttcgcgccacaactggcggtattgcattttcctgactgggaaacgctgccctacgacatc
ttctcgccgcaccaggacatcgtctcccagcgcattgccgccctctaccagctaccggag
ctgagccacggcgtgctggtagtgccgatcactaccgccctacacaggctggcgccaaag
cgcttcctgctgggttcgagcctggtgctggacgtcgggcagaagctggatgtggagcag
atgcgcctgcgcctggaagcagccggctatcgctgcgtggacaccgtgtacgagcacggc
gagttcgccgtgcgcggcgcgttgatcgacctgttccccatgggcagccccctgccctac
cgcatcgacctgttcgatgacgagatcgagacactgcgcaccttcgatccggagaaccag
cgctcgatcgacaaggtcgagtcgatccgcctgttgccagcacgcgagttccccctgaag
aaggaggcagtcaccggcttccgcgcgcgtttccgcgagcgtttcgacgtcgacttccgc
cgctgcccgatctaccaggatctctctaccggcatcaccccagcgggcatcgagtattac
ctaccgctgttctacgaagaaaccgcgacgcttttcgactacctgcctgaagacagccag
gtgttctccctgcccggcatcgagcaggccgccgagcagttctggagcgacgttcgcaat
cgctacgaagaacgccgcgtcgaccccgagcgaccgctgctgccgccggccgaactgttc
atgccggtggaagactgcttcgctcggctcaagctctggccacgtgtggtcgccagccaa
caggatgtcgagcctggcatcggccgagaacgcttcaccgcgcaggccctgccggaactg
gcaatcgaggccaaggcgagcgaaccgctgggcaagctgcgacgcttcctcgacgaatat
gccgggcgtgtgctgtttactgccgaatcagccggccgccgcgaagtattgctggagctg
ctcgcccgtctgaagctgcgcccgcaagaagtcgaaggctgggaggaattcctcgccagc
caggagcgcctggcgatcaccatcgccccgctcgacgaaggcctgcaactggacgacgtc
gcactggtcgcggaaagcccgctgttcggtcagcgcgtcatgcagcgccggcgacgcgag
aagagtcgcgacggtggcgagaacgtcatcaagaacctcaccgagctgcgcgaaggctcg
ccggtggtgcacatcgatcacggtgtcggtcgctaccagggcctggtcaccctggagatc
gaaggccaggcgcaggaattcctgctgctgcagtacgccgaggacgccaagctctacgta
ccggtcgccagcctgcacctgatcgcccgctatacaggcagcgacgacgcgctcgcgcca
ctgcaccggctcggctcggaaacctggcagaaagccaagcgtaaggcggccgagcaggtc
cgcgatgtcgcggccgagctgctggatatttacgcccgccgcgccgcacgcgagggttat
gccttcaaggacccgcaggtcgactacgaaacgttcgccgcaggctttccgttcgaagag
acgcccgatcagcaggccgccatcgacgcggtacgcgaggacctgctgtcggccaagccg
atggatcgcctggtctgtggtgacgtcggctttggcaagaccgaggtcgccatgcgtgcc
gccttcatcgccgtccatggcggccggcaggttggcgtactggtgccgaccaccctgctc
gctcagcagcactacaacagcttccgcgaccgcttcgccgactggccggtgcgggtcgag
gtgatgagccgcttcaaatccgccaaggaagtgcagagcgccatcgccgaactggccgag
ggcaagatcgacattctcatcggcacccacaagctgctgcaggatgacgtcaagttcagc
aacctgggcctggtcatcatcgacgaggaacaccgtttcggcgtgcgccagaaggaacag
ctcaaggcattgcgcagcgaagtggacattctcacgctgaccgccacgccgattccacgc
acgctgaacatgtccatcgccggcatgcgcgacctgtcgatcatcgccacgccgccggcg
cgccggctgtcggttcgcaccttcgtcatggaacagcagaacaccgtgatcaaggaggcg
ctgctgcgcgagctgttgcgcggcggccaggtctattacctgcacaacgatgtgaagacc
atcgagaaatgcgccgccgaccttcaggcactggtgccggaggcacgcgtcgcgatcggc
cacgggcaaatgcgcgagcgtgacctcgaacaggtcatgagcgacttctaccacaagcgt
ttcaacgtgctggtggcctcgaccattatcgaaaccggcatcgacgtgccgagcgccaac
accatcatcatcgagcgcgccgacaagttcggcctggcgcagctgcaccagctgcgtggc
cgggtaggccgcagccatcaccaggcctatgcctatctgctgaccccgacccgcaaggca
atgaccgatgacgcgcagaagcgcctggaggccatcgccaatgcccaggacctcggtgca
ggctttgtcctcgccacccacgacctggaaatccgcggcgccggcgagctgctcggcgag
ggtcagagcgggcagatccaagcggttggcttcaccctttatatggaaatgctcgagcgc
gcggtcaaggcgatccgcaaaggcgagcagccgaatctggagcagccgctcggcggcggg
ccggaaatcaacctgcgcctggcagccctgatcccggaagactacctgccggatgtgcat
gcccgcctgatcctctacaagcgcattgccaatgcggccgacgaagacgggctgaaagaa
ctgcaggtggagatgatcgaccgcttcggcctgctaccggaaccgacgaagaacctggtg
cgcctgacactgctcaagctgcaggcggaaaagcttggcattaccaagatcgacgcaggc
ccgcagggtgggcgcatcgagttctcggccgacacctcggtcgacccgatggtgctgatc
aagctgatccagagtcagccgaatcgctacaagttcgaaggcgccacgctgttcaaattc
caggtgccgatggaacgcccggaggaacgcttcaatacgctggaagcgctgctcgagcgg
ctggcgcccaatgagcaaggatcgtag
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integrated database retrieval system
