Stutzerimonas chloritidismutans: LLJ08_08045
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Entry
LLJ08_08045 CDS
T07923
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pchl
Stutzerimonas chloritidismutans
Pathway
pchl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pchl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LLJ08_08045
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pchl03019
]
LLJ08_08045
03009 Ribosome biogenesis [BR:
pchl03009
]
LLJ08_08045
Enzymes [BR:
pchl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LLJ08_08045
Messenger RNA biogenesis [BR:
pchl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LLJ08_08045
Ribosome biogenesis [BR:
pchl03009
]
Prokaryotic type
rRNA helicases
LLJ08_08045
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
HEM4
TrkA_N
Motif
Other DBs
NCBI-ProteinID:
UEG63072
LinkDB
All DBs
Position
1703159..1704829
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AA seq
556 aa
AA seq
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MTQEIGGFAALGIHSAVLAAISAVGYEEPSPIQSQAIPVILGGHDMIGQAQTGTGKTAAF
ALPILSKIDPARKEVQALILAPTRELALQVATAFETYSKQMPGLTVVAVYGGAPMGPQLK
AIRQGAQVIVATPGRLVDHLSRNSGLLSTIRFLVLDEADEMLKLGFMDDLEVIFEAMPES
RQTVLFSATLPHSIRAIAEKHLREPQHIKIAAKTQTVARIEQAHLMVHADQKIQAVLRLL
EVEDFDALIAFVRTKQATLDLAAALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIVV
ATDVAARGLDVARITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVI
ERVTNQKVAEARLPNAQQVLDARIKKLTNSLAPLVADAEATHGELLDKLVADIGCSPRAL
AAALLRKATNGQALTLAEVEREQPLVPTSSPRERTERSDRPERSGDRERRAPVPLAEGRA
RCRTPLGARDGIAARNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLERLLGKLKD
TRVGGKQLKLRRYRED
NT seq
1671 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggaaatcggcggctttgccgcactcggtattcactccgctgttctggctgcc
atcagcgcagtcggctacgaagaaccatcccctattcaatctcaggcgatcccggtgatc
cttggcggtcacgacatgatcggccaggcgcagaccggtaccggcaagaccgcggccttt
gcgctgccgatcctgtccaagatcgatcccgctcgtaaggaagtgcaggcactgatcctc
gcgccgactcgcgaactggccctgcaggtcgccactgcattcgaaacctattccaagcag
atgcctggcctgaccgtcgtcgcggtctacggtggcgcacccatgggcccgcagctcaag
gccattcgccagggcgcgcaggtcatcgttgcgactccgggccgtctggttgaccacctg
agccgcaacagtggcctgctgtcgaccatccgcttcctggtactcgacgaggcggacgag
atgctcaagctgggcttcatggacgacctcgaagtgatcttcgaagcgatgccagagagc
cgtcagactgttctgttctccgctacgctgccgcactccattcgcgcgattgccgaaaag
cacctgcgtgagccgcagcacatcaagatcgctgccaagacccagaccgtcgctcgtatc
gagcaggcacacctgatggtccatgccgatcagaagatccaggctgtgctgcgtctgctg
gaagtcgaggatttcgacgccctgattgccttcgtgcgcaccaagcaagccacgctggat
ctggccgccgcgctggaagccaagggctacaaggccgctgcgctgaacggcgatatcgcc
cagaaccagcgtgagcgcgttatcgaatcgctcaaggatggccgcctggacatcgtcgtc
gccaccgacgtcgccgcccgtggtctcgacgtggcgcgcatcacccacgtattcaacgtg
gacatgccctacgatccggagtcctacgtacaccgcatcggccgtaccggccgtgccggt
cgtgaaggccgtgcgctgctgctggtcaccccgcgtgagcgtcgcatgctgcaggttatc
gagcgcgtgaccaaccagaaggtcgctgaagcccgtctgccgaatgcgcagcaggtgctg
gacgcccgcatcaagaaactcactaacagcctcgcgccgctggttgccgatgccgaagcc
acccatggcgagttgctcgacaagctggttgccgacatcggttgcagccctcgtgctctg
gccgctgcactgttgcgtaaggccaccaatggtcaggctctgaccctggccgaggtggaa
agagagcagccgttggttccgaccagcagcccgcgtgagcgcaccgaacgttcggatcgt
ccagagcgtagtggtgatcgcgagcgtcgcgctccggtcccgctggccgaaggccgcgcc
cgctgccgtacgccgcttggagcgcgtgacggcatcgctgcccgcaatctgctcggcgcc
atcctcaacgaaggcggcctagcccgcgaagccatcggccgcatccaggtgcgcgacagc
ttcagcctggtcgagcttccggaagacggtctcgagcgcttgcttggtaaactcaaggac
acccgcgtcggtggcaagcagctcaagctgcgtcgctatcgcgaggattga
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