Stutzerimonas chloritidismutans: LLJ08_13110
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Entry
LLJ08_13110 CDS
T07923
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
pchl
Stutzerimonas chloritidismutans
Brite
KEGG Orthology (KO) [BR:
pchl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pchl03009
]
LLJ08_13110 (rlmD)
Enzymes [BR:
pchl01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
LLJ08_13110 (rlmD)
Ribosome biogenesis [BR:
pchl03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
LLJ08_13110 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
Methyltransf_25
Methyltransf_11
Cons_hypoth95
MTS
PCMT
TRM5-TYW2_MTfase
Methyltransf_23
Methyltransf_15
Methyltr_RsmB-F
PrmA
Methyltransf_12
RrnaAD
UPF0020
TehB
Motif
Other DBs
NCBI-ProteinID:
UEG60080
LinkDB
All DBs
Position
complement(2846961..2848313)
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AA seq
450 aa
AA seq
DB search
MAKRSGALRFQPSGGERKPQVPVGKKQRLIIERLANDGRGIAFIEGRTWFVEGALAGEEV
EARVLAARSQIVEARCERVLQASAQRRAEPCPHARRCGGCNLQHVPVADQLALKQHTLAE
QFARVADLQPEVWAEPLVGPAFGYRRRARLAVRWDVKRKHLDIGFRASASQEIVSISECP
VLVQPLQSLLPALLAALRDLSKPQVIGHVELFSGTAEAVLIRHTAALSETDVGRLRSFAT
VNGAQLWWQGEGEPESDDPAATLGYRLDAWDLELAWRPGDFVQVNAPVNDAMVAQALEWL
DVGRDETVLDLFCGLGNFSLPLARSGAQVVGVEGVETMVTRAQENARRNALAHAHFYRAD
LSKPLADAPWARNDFAAVLLDPPRDGALEIVRQMSKLKARRVVYVSCNPATLARDARELA
SQGYRLKRAGVLDMFPQTAHVEAMALFERG
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
atggccaaacgtagcggcgctctgcgctttcaacctagcggcggcgagcgcaagccccag
gtgccggtcggcaagaagcagcgcctgattatcgagcgactggccaatgatgggcgcggc
attgccttcatcgaggggcgcacctggttcgtcgaaggcgcgctggctggcgaagaggtc
gaggcgcgcgtgctggctgcgcgcagtcagatcgtcgaagcgcgctgcgagcgcgtgctc
caggccagtgcgcagcgtcgggccgaaccctgtccgcatgctcgccgatgtggcggctgc
aacctgcagcatgtgcccgtcgccgatcagcttgcgctgaaacagcacacgctcgccgag
cagttcgcgcgggtggccgatctgcagccggaggtatgggccgagccgctggtgggaccg
gctttcggctatcgccgtcgcgctcggttggcggtgcgctgggacgtcaagcgcaagcat
ctggacatcggtttccgcgccagcgccagccaggaaatcgtctccatcagtgaatgcccg
gttctggtacagcccttgcagtcgctgctgccggcattgctggctgcattgcgtgatctg
agcaagccgcaggttatcggccacgtcgaactcttcagtggtacggccgaggcggtgctg
atccgccacaccgcagccttgtcggaaacagacgtgggacgtttgcgcagcttcgccacc
gtcaatggagcgcagctctggtggcagggcgaaggtgagcctgaatcggatgatcccgcg
gcgacgctgggttaccgactggatgcctgggatctggagctggcctggcgtccgggcgat
ttcgtccaggtcaacgcgccggtcaatgatgcgatggtcgctcaggctctggaatggctg
gacgtcggccgggatgagacagtgcttgatctgttctgcgggctaggcaatttcagcctg
ccgctggcgcgctcgggcgctcaagtagtgggtgtcgagggtgtagagacgatggttacg
cgggcgcaggaaaatgcccgtcgtaatgctctggcgcacgcgcacttttatcgggccgac
ttgtcgaagccgctggctgacgcaccctgggcgcgcaatgattttgccgcggtgctgctc
gatccgccgcgcgacggcgcgctggaaatcgttcgacaaatgtcgaagctgaaggcgcgg
cgcgtggtctatgtttcatgcaatccggccaccctggcgcgcgatgcgcgcgagctggcc
agccagggatatcgcctgaagcgtgcgggtgtgctggacatgttcccgcagaccgcccac
gtcgaggccatggcgttgttcgagcggggttag
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