Stutzerimonas chloritidismutans: LLJ08_13170
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Entry
LLJ08_13170 CDS
T07923
Name
(GenBank) DEAD/DEAH box helicase
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
pchl
Stutzerimonas chloritidismutans
Brite
KEGG Orthology (KO) [BR:
pchl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pchl03009
]
LLJ08_13170
Enzymes [BR:
pchl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LLJ08_13170
Ribosome biogenesis [BR:
pchl03009
]
Prokaryotic type
rRNA helicases
LLJ08_13170
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
UEG60092
LinkDB
All DBs
Position
complement(2859597..2860928)
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AA seq
443 aa
AA seq
DB search
MFDQFALHERLLKAVAELKFVEPTPVQVAAIPPALEGRDLRVTAQTGSGKTAAFVLPMLN
RLIGDAVVRTDVRALILLPTRELAQQTLKEVERFSQFTFIKSAMITGGEDFKVQAAVMRK
VPDILIGTPGRMIEHLNAGTLVLKDVEMLILDEADRMLDMGFAEDVQRLVGECAKRQQTL
LFSATSGGAALREMTASVLRDPLHLQLNRVSELNEGTRQQIITAENTEHKEKLVHWLLAN
ETYKKAVIFTNTRVQADRLYGRLVAEGVKAFVLHGDKDQKDRKLAIDRVKEGGVKVLVAT
DVAARGLDIEGLDLVINFDMPRSGDEYVHRIGRTGRAGGEGLAISLICHNDWNLMSSIER
YLKQRFERRVIKGLKGSYMGPKNLKASGKAAGTKKKKIEKKKGTEKKSKPAGKRPNGAKR
ESPSPVVSQDGMAPLKRKKPTAE
NT seq
1332 nt
NT seq
+upstream
nt +downstream
nt
ttgtttgaccaattcgccctgcacgaacgcctgctaaaggctgtcgccgaactcaaattc
gtcgagccgactccagtgcaggtggcggccattccgccggcgctggaagggcgtgacctg
cgggtgacggcacagactggcagcggcaagaccgccgccttcgtactgccgatgctcaat
cggctgattggcgatgccgtggtgcgcaccgatgttcgggcgctgattctgttgccgacc
cgagagctggcgcagcagacgctgaaggaggtcgagcgtttctcgcaattcaccttcatc
aagtcggcgatgattaccggtggcgaggacttcaaggtccaggccgcagtcatgcgcaag
gtgccggacattctcatcggcacgcctgggcgcatgatcgagcaccttaatgccggcacg
ctggtcctcaaggatgtcgagatgctgatcctcgacgaagccgaccgcatgctcgacatg
ggctttgccgaggacgtgcagcgtctggtcggcgagtgcgccaaacgccagcagacgctg
ctgttttccgcgaccagtggcggtgccgcgctgcgcgagatgaccgccagcgtgctgcgc
gacccgctgcacctgcagctcaaccgcgtcagcgaactcaacgaaggcacgcgccagcag
atcatcactgccgaaaacaccgaacataaggaaaagttggtgcactggctgctcgccaac
gagacgtacaagaaggcagtgatcttcaccaacacccgcgtacaggccgaccgcctctac
ggccggctcgttgccgagggcgtgaaggcgttcgtgctgcatggcgacaaggaccagaaa
gaccgcaagctggcgatcgaccgggtcaaggaaggcggcgtcaaggtgctggtagcgacc
gacgtggcggcgcgcgggttggacatcgaagggctggatctggtgatcaacttcgacatg
ccgcgctcgggtgacgaatacgtgcaccgtatcggtcgtacggggcgcgccggtggcgaa
gggctggcgatctcgctgatctgtcacaacgactggaacctgatgtccagcatcgagcgt
tatctcaagcagcgtttcgagcggcgggtgatcaaggggctgaaaggcagctacatgggc
ccgaagaaccttaaagcgtcgggcaaggccgctggcaccaagaagaaaaagatcgaaaag
aagaaaggcaccgagaagaaatccaaacctgccggcaagcgcccgaacggcgccaagcgc
gagtcaccatcgccggtggtgagccaggatggcatggcgccgctcaagcgcaagaagccg
acggccgagtaa
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