Stutzerimonas chloritidismutans: LLJ08_16025
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Entry
LLJ08_16025 CDS
T07923
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
pchl
Stutzerimonas chloritidismutans
Pathway
pchl02020
Two-component system
pchl02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pchl00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
LLJ08_16025
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
LLJ08_16025
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pchl03021
]
LLJ08_16025
Transcription machinery [BR:
pchl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
LLJ08_16025
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
Acyl-CoA_dh_C
HTH_IclR
DUF4741
RRP4_S1
Motif
Other DBs
NCBI-ProteinID:
UEG60625
LinkDB
All DBs
Position
3429895..3431409
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AA seq
504 aa
AA seq
DB search
MKPSLVLKMGQQLTMTPQLQQAIRLLQLSTLDLQQEIQEALDSNPMLEREEDGDDFDSSD
PMAEAAERPGDTVTEKSSSQESTYEGPSHSSDSLDDSDGDWGERIPSELPVDTAWEDIYQ
TSASSLPSNDDDEWDFTSRTSSGISLQSHLLWQLNLAPMSDTDRLIATTLIDCINEQGYL
EETLQEIVDSFDPELEIELDEVEVVLRRIQQFEPAGIGARDLRECLLLQLRQLPDRTPWL
SEAKRLVSDYLDILGSRDYSLLMRRMKIKEDDLRQVIELIQSLNPRPGSQIEASEPEYVV
PDVIVRKHNDRWLVELNQEAMPRLRVNAQYAGFVKRADSSADNTFMRNQLQEARWFIKSL
LSRNETLMKVATQIVEHQRAFLEHGDEAMKPLVLHDIAEAVGMHESTISRVTTQKYMHTP
RGIYELKYFFSSHVSTAEGGECSSTAIRAIIKKLVAAENQKKPLSDSKIAGLLEAQGIQV
ARRTVAKYRESLGIAPSSERKRLL
NT seq
1515 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccatcgctagtcctgaagatgggccagcagctgacgatgacaccgcagctgcaa
caggccatacggctcctccagctatccaccctcgatctgcaacaggagatccaggaggcg
ctggactccaaccccatgctcgaacgcgaagaagacggagacgacttcgacagctccgac
cctatggccgaggccgctgaacggccaggcgacaccgtcaccgagaaaagcagcagccag
gaaagcacctacgaggggccctctcatagcagtgacagcctggacgacagcgacggcgac
tggggcgagcggattcccagcgagcttccggtcgacaccgcctgggaagacatctaccag
accagcgccagcagcctgcccagcaacgatgacgacgagtgggatttcaccagccggaca
tcgagcggcataagcctgcagagccatctgctgtggcagctcaacctcgcgccaatgagc
gacaccgaccggctgatcgcgaccaccctcatcgactgcatcaatgaacagggttatctc
gaagagacgctgcaggaaatcgtcgactcgttcgatcccgagctggaaatcgaactcgac
gaggtcgaggtcgttctgcgtcgtatccagcaattcgaaccggccggcatcggcgcacgt
gatctgcgtgagtgtctgctgttgcagctgcgccaactgcccgaccgcacaccatggctg
agcgaagcgaagcgtctggtcagcgactatctggacatcctcggcagccgggattacagc
ctgctgatgcggcgaatgaagatcaaggaagacgatctgcgccaggtcatcgaactgatc
cagagcctgaacccgcgcccggggtcgcagatcgaggcgagcgaaccggaatacgtggtg
cccgacgtgatcgtgcgcaagcacaatgatcgctggctggtcgagctgaatcaggaagcc
atgccgcgccttcgcgtcaacgcgcaatacgccggcttcgtcaaacgcgccgactccagc
gcggacaacaccttcatgcgcaaccagctgcaggaagcgcgctggttcatcaagagcctg
ctcagccgcaacgagaccctgatgaaggtggcgactcagatcgtcgaacaccagcgcgcc
ttcctcgagcatggtgacgaggcgatgaagcctctggtactgcacgacatcgccgaggcg
gtgggcatgcatgagtcgaccatctcccgcgtgaccacgcagaaatacatgcacacgcca
cgcggcatctacgaactcaaatacttcttctccagccacgtcagcacggcggaaggcggc
gaatgttcgtccaccgcgatccgcgcgatcatcaagaaactggtcgccgcggaaaaccag
aaaaagccgttgagcgacagcaagatcgctggtttactggaagcgcagggcatccaggtg
gcccgccgcacagttgcgaagtaccgcgagtcgctcggtatcgcaccatccagcgagcgc
aaacgtctactgtga
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