Stutzerimonas chloritidismutans: LLJ08_17315
Help
Entry
LLJ08_17315 CDS
T07923
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pchl
Stutzerimonas chloritidismutans
Pathway
pchl03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pchl00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LLJ08_17315 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pchl03021
]
LLJ08_17315 (rpoC)
03400 DNA repair and recombination proteins [BR:
pchl03400
]
LLJ08_17315 (rpoC)
Enzymes [BR:
pchl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LLJ08_17315 (rpoC)
Transcription machinery [BR:
pchl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LLJ08_17315 (rpoC)
DNA repair and recombination proteins [BR:
pchl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LLJ08_17315 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
DUF3150
PPDFL
ApbA_C
Motif
Other DBs
NCBI-ProteinID:
UEG60878
LinkDB
All DBs
Position
complement(3686464..3690663)
Genome browser
AA seq
1399 aa
AA seq
DB search
MKDLLNLLKNQGQIEEFDAIKIALASPEMIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVALAKVRRERMAHIELASPVAHIWFLKSL
PSRIGLLLDMTLRDIERVLYFESYVVIDPGMTTLEKGQLLNDEQYFEALEEFGDDFDARM
GAEAVRELLIQIDLEHEIGRLREEIPQTNSETKIKKLSKRLKLMEAFHGSGNLPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLSAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIFGKLEMRGMATTIKAAKKMVERELPEVWDVLAEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTREAINAKGEGRVFADLQEVDRVFRAG
EASLHARVKVRINETIKDRDGSITKNTRIVDTTVGRALLFQIVPAGLSFDVVNQPMKKKA
ISKLINLCYRTVGLKDTVIFADQLMYTGFAYSTISGVSIGVNDFVIPDEKARIIDAATEE
VKEIESQYASGLVTQGEKYNKVIDLWSKANDEVSKAMMANLSKEKVIDRDGNEAEQDSFN
SMYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEVDCGTEQGLFMTPHIEGGDVVEPLGERVL
GRVIARDVLKPGTDDVLVPAGTLVDEQWVDFIELNSIDEVVVRSPISCETRYGICAKCYG
RDLARGHQVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRTSAVDNVMVKNGGTIRL
HNLKHVERADGALVAVSRSGELAVADDFGRERERYKLPYGAVISVKEGDKVDAGAVVAKW
DPHTHPIVTEMKGVVTFVGMEENITIKRQTDELTGLTNIEVMDPKDRPASGKDIRPAIKM
VDANGKELLLPGTDVPAQYFLPANALVGVADGAEINVGDVIARIPQETSKTRDITGGLPR
VADLFEARRPKEPSILAEISGTISFGKETKGKRRLVITPTDGSDPYEELIPKWRHLNVFE
GEQVNKGEVISDGPSNPHDILRLLGVSALAKYIVNEIQDVYRLQGVKINDKHIETILRQM
LRKVEISESGDSSFIKGDQMELTQVLEENERLSDDDKFVSKYVRVLLGITKASLSTESFI
SAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRLIPAGTGLQYHSERKRKREADKPVR
VSADEVEAALTEALNSSGN
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagacttgctgaatctgttgaaaaaccagggtcaaatcgaagagttcgatgccatc
aagattgccctggcttcgcccgagatgatccgttcctggtccttcggtgaagtaaagaag
ccggaaaccatcaactaccgtacgttcaagccggagcgcgacggtctgttctgcgccaag
atctttggtccggtaaaggactacgagtgcctgtgcggtaagtacaagcgcctcaagcac
cgcggtgtcatctgcgagaagtgtggtgtggaagtcgcactggccaaggtacgccgcgag
cgcatggcgcacatcgagctggcttcgccggttgcccacatttggttcctgaagtcgctg
ccgtcccgtatcggtctgctgctggacatgactctgcgcgacatcgagcgcgtgctctat
ttcgaaagctatgtcgtcatcgatccgggcatgactaccctggaaaagggtcagctgctt
aatgacgagcagtacttcgaagcgctggaagagttcggtgacgacttcgatgcccgcatg
ggtgccgaggctgtgcgcgagctgttgatccagatcgacctggagcacgaaatcggtcgc
ctgcgcgaggaaatcccgcagaccaactccgaaaccaagatcaagaagctctccaagcgg
ctgaagctgatggaagcgttccacggctcgggcaacctgccggagtggatgatcctcacc
gtgctgccagtactgccgccggatctgcgtccgttggttccgctggatggcggtcgtttc
gcgacttcggatctcaacgatctgtatcgccgcgtgatcaaccgtaacaaccgtttgaag
cgtctgctcgacctgtcggcgccggacatcatcgtgcgcaacgagaagcgcatgctgcag
gaagccgtcgatgcgttgctggataacggccggcgcggtcgagccatcaccggctcgaac
aagcgtccgctgaagtccctggctgacatgatcaagggtaagcagggtcgcttccgtcaa
aacctgctcggtaagcgcgtggactactccggtcgttccgtgatcaccgtgggcccgact
ctgcgtctgcatcagtgcggtctgccgaagaagatggctctcgagctattcaagccgttc
attttcggcaagctcgaaatgcgcggcatggccaccaccatcaaggcggccaagaagatg
gtagagcgcgagctgcccgaggtctgggacgttctcgccgaagtcattcgcgaacacccc
gtgctgctcaaccgcgcaccgaccctgcaccgtctgggtatccaggcgtttgagccggtg
ctgatcgaaggcaaggcgattcagctgcacccgctggtctgcgccgcgtacaacgccgac
ttcgacggtgaccagatggccgtgcacgtgccgctgaccctggaagcccagctcgaagcg
cgcgcgctgatgatgtcgaccaacaacatcctttcgccagcgaacggcgagccgatcatc
gttccgtcgcaggacgtggttctgggtctgtactacatgacccgtgaagccatcaacgcg
aagggtgaaggccgggtcttcgcggatctgcaggaagtcgaccgtgtcttccgcgccggc
gaagcgtcgctgcacgcccgggtgaaggtgcgcatcaacgaaaccatcaaggatcgtgac
ggcagcatcaccaagaacacccgtatcgtcgacaccactgttggtcgcgcgctgctgttc
cagatcgtgccggccggcctgtcgttcgacgtggtcaaccagccgatgaagaagaaggca
atctccaagctgatcaacctgtgctaccgcactgttggcctgaaggacactgtgatcttc
gccgaccagctgatgtacaccggtttcgcctactcgactatctccggtgtttccatcggc
gtgaatgacttcgtcattccggatgagaaggcacgcatcatcgatgcggcaaccgaggaa
gttaaggagatcgaaagccagtacgcttccggcctggtaacccagggcgagaagtacaac
aaggtgatcgacctttggtccaaggccaacgatgaagtttccaaggcgatgatggccaac
ctctccaaggagaaggtcattgatcgtgatggtaacgaagccgagcaggactcgttcaac
tcgatgtacatgatggccgactcgggcgcgcggggttccgctgcgcagattcgtcagctc
gccggcatgcgtggtctgatggccaagccggacggctcgatcatcgaaacgccgattacc
gcgaatttccgtgaaggtctgaacgtactccagtacttcatctccactcacggtgctcgt
aagggtctggcggataccgctctgaaaaccgcgaactccggttacctgactcgtcgtctc
gtcgatgtcgcgcaggatctggtcgttaccgaagtggattgcggtaccgagcagggcctg
ttcatgaccccgcacattgagggtggtgacgtagtcgagccgctgggtgagcgcgttctc
ggtcgtgtgattgcgcgtgatgtactcaagccgggcaccgacgatgtgctggtgccggcc
ggtacgctggttgacgagcagtgggtcgacttcatcgagttgaacagcatcgacgaagtg
gtcgtgcgctcgcctatttcctgcgaaacccgctacggtatctgcgccaagtgctacggc
cgcgacctggcccgcgggcatcaggtgaacatcggtgaggcggtgggcgttatcgctgct
cagtccatcggtgagccgggtacccagctgaccatgcgtacgttccacattggtggtgcg
gccagccgtacttctgctgtcgacaacgtcatggttaagaacggcggcaccattcgtctg
cataacctgaaacacgtagaacgtgccgatggtgcgctggtggcggtatcccgctccggt
gagctggcggtggccgacgacttcggtcgtgagcgcgagcgctacaagctgccgtacggc
gcggtgatttccgtcaaggaaggcgacaaggtcgatgcgggtgctgtggtcgccaagtgg
gacccgcacactcacccgatcgtcaccgagatgaagggtgtcgtgaccttcgtcggcatg
gaagagaacatcaccatcaagcgccagaccgacgagttgaccggtctgaccaacatcgaa
gtgatggatccgaaggaccgtccggcatcgggcaaagacattcgcccagcgatcaagatg
gtcgacgccaatggtaaggaactgctgctgccgggtaccgacgtgcctgctcagtacttc
ctgccggctaacgccctggtgggtgtggctgacggtgccgagatcaacgtgggtgacgtc
atcgcacgtatcccgcaggaaacatcgaagacccgcgatatcaccggtggtctgccgcgc
gttgctgacttgttcgaagcacgtcgtccgaaggagccgtccatcctggcggaaatcagc
ggtacgatttccttcggtaaggaaaccaagggcaagcgccgcctggtgatcacgcctaca
gacggcagcgatccgtacgaggaactgattccgaagtggcgtcacctgaacgtcttcgaa
ggcgagcaggtgaacaagggcgaggtcatctctgatggcccgagcaacccgcatgacatc
cttcgtctcttgggtgtcagtgcgctggccaagtacatcgtcaatgaaattcaggacgtg
taccgtctgcaaggcgtgaagatcaacgacaagcacatcgagaccatcctgcggcaaatg
ctgcgcaaggttgagatcagtgagtcgggcgattccagcttcatcaagggtgaccagatg
gagctgacccaggtattggaagaaaacgagcgtttgagcgacgacgacaagttcgtctcc
aagtacgtccgcgttcttctgggtatcaccaaggcatcgttgtcgaccgagtcgttcatt
tctgcggcgtcgttccaggaaacaacgcgtgttctgaccgaggctgccgttactggcaag
cgcgattatctgcgcggtctcaaggagaacgtagtcgtgggtcgcctgattccagctggt
acgggcctgcagtatcacagcgagcgtaagcgcaagcgtgaagccgacaagcccgttcgt
gtgagcgccgatgaggtcgaagcagctctgaccgaggcgttgaactccagcggtaactaa
DBGET
integrated database retrieval system
