Stutzerimonas chloritidismutans: LLJ08_17320
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Entry
LLJ08_17320 CDS
T07923
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
pchl
Stutzerimonas chloritidismutans
Pathway
pchl03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pchl00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LLJ08_17320 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pchl03021
]
LLJ08_17320 (rpoB)
03400 DNA repair and recombination proteins [BR:
pchl03400
]
LLJ08_17320 (rpoB)
Enzymes [BR:
pchl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LLJ08_17320 (rpoB)
Transcription machinery [BR:
pchl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LLJ08_17320 (rpoB)
DNA repair and recombination proteins [BR:
pchl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LLJ08_17320 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
DUF5915
7TMR-HDED
IniB
Motif
Other DBs
NCBI-ProteinID:
UEG60879
LinkDB
All DBs
Position
complement(3690729..3694799)
Genome browser
AA seq
1356 aa
AA seq
DB search
MAYSYTEKKRIRKDFSKLPHVMDVPYLLAIQLDSYREFLQAGATKDQFRDIGLHAAFKSV
FPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTFAVPLRVKVRLIIFDKESSNKAIKD
IKEQEVYMGEIPLMTENGTFIINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSARI
IPYRGSWLDFEFDPKDAVFVRIDRRRKLPASVLLRALNYSTEEILDAFYDTNIFHVKGET
LALELVPQRLRGEIATFDIKDENGKVIVEQGRRITARHINQLDKSGIKELEMPMDYVLGR
TVAKAIVHPATGEIIAECNTELTVDAMAKIVKAQVVRFETLYTNDIDCGPFISDTLKIDS
TTNQLEALVEIYRMMRPGEPPTKDAAETLFNNLFFASERYDLSAVGRMKFNRRIGRTEIE
GSGVLSREDIVAVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRVERAV
KERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEITHKRRVSALGP
GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAAYARTNQYGFLESPYRVVK
EGEVTDEIVFLSAIEEADHVIAQASAKLEGRKLVDELVAVRHLNEFTVKAPEDVTLMDVS
PKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRSDKPLVGTGMERNVARDSGVCV
VARRGGVIDSVDASRVVVRVHDGEVETGEAGVDIYNLTKYTRSNQNTCINQRPLVRKGDV
VERGDIMADGPSTDMGELALGQNMRVAFMPWNGYNFEDSILLSERVVQEDRFTTIHIQEL
TCVSRDTKLGPEEITADIPNVGEAALNKLDEAGIVYVGAEVGPGDILVGKVTPKGETQLT
PEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFIRDGVERDSRALAIEKMQLDEI
RKDLNEEFRIVEGATFERLRSALVGATAEGGAGLKKGAVITDEILDGLEHGQWFKLRMAE
DALNEQLEKAQAYISDRRQLLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIKRRIQPGD
KMAGRHGNKGVVSVIMPVEDMPHDANGTPVDIVLNPLGVPSRMNVGQILETHLGLAAKGL
GEKINLMLEEQRKVAELRKFLHEIYNEIGGRQENLDDLSDQEVLDLANNLRKGVPMATPV
FDGAKEREIKAMLKLADLPESGQMQLFDGRTGNKFERTTTVGYMYMLKLNHLVDDKMHAR
STGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYK
NIVDGDHRMEAGMPESFNVLIKEIRSLGIDIDLETE
NT seq
4071 nt
NT seq
+upstream
nt +downstream
nt
atggcttactcatacactgagaaaaaacgtatccgcaaggactttagcaagttaccgcac
gtgatggacgtgccgtatcttttggccatccagctggattcgtaccgcgaattcctgcag
gcgggagcgaccaaagatcagttccgcgacattggcttgcatgcagccttcaaatccgtt
ttcccgattatcagctattccggcaatgcagcgctggaatacgtcggctatcgcctgggc
gagccggctttcgatgtcaaggaatgtgtcctgcgcggcgtgaccttcgccgttccgctg
cgcgtcaaggtgcgcctgatcattttcgacaaagagtcgtcgaacaaggccatcaaggac
atcaaggagcaggaagtctacatgggggaaatccccctgatgaccgagaacggtaccttt
atcatcaacggtaccgagcgcgttattgtctcccagctgcaccgctcgccgggcgtgttc
ttcgatcatgaccgtggcaagactcacagctccggtaagcttttgtattctgctcgtatc
attccttaccgtggctcttggctggacttcgaattcgatccgaaggatgccgtattcgtc
cgtatcgatcgtcgccgcaagctgcccgcttcggtacttctgcgtgctttgaattacagc
accgaagaaattctcgatgccttctacgacaccaacatcttccatgtgaagggcgaaacc
cttgcgttggagttggtgccgcagcgtctgcgtggcgagatcgccacgttcgacatcaag
gatgagaacggcaaggtcatcgtcgagcaggggcgtcgcatcacggctcgtcacatcaat
cagctcgataagtccggtatcaaagagcttgagatgccgatggactacgtcttggggcgc
accgttgccaaggcgatcgtgcatccggccaccggcgaaatcatcgcagagtgcaacacc
gagctgacggtcgatgccatggcgaagatcgtcaaggctcaggtcgttcgtttcgagacc
ctgtacaccaacgatatcgactgcggtccgttcatttccgatacgctgaagatcgactcg
accaccaaccagcttgaagcgctggtcgagatctatcgcatgatgcgtcctggcgagccg
ccaaccaaggatgcagccgagacgttgttcaacaatctgttcttcgcctcggagcgctac
gacctgtccgctgtgggtcggatgaagttcaaccgtcgtatcggtcgtaccgagatcgag
ggttcgggcgttctgagccgcgaagacatcgtcgccgtcctcaagaccctggtcgatatt
cgtaacggcaagggcatcgttgacgacatcgatcacctgggtaaccgtcgtgttcgttgc
gttggcgagatggccgagaaccagttccgcgttggcctggtccgtgtcgagcgcgccgtc
aaggagcgtctgtcgatggccgaaagtgaaggcctgatgccgcaggacctgatcaatgcc
aagccggttgcggcggcggtcaaggagttcttcggttccagccagctttcgcagttcatg
gaccagaacaacccgctgtcggaaatcacccacaagcgccgtgtctccgcacttggcccg
ggtggtctgacccgtgagcgcgccggcttcgaagtgcgtgacgtacacccgacccactac
ggtcgcgtatgcccgatcgagactcctgaaggtccgaacatcggcctgatcaactcactg
gctgcctatgctcgcaccaaccagtacggcttcctggaaagcccgtaccgcgtggtcaag
gaaggcgaggtcactgatgagatcgtgttcctctcggcgatcgaagaagccgaccatgtt
attgctcaggccagcgccaagctggaaggtcgcaagctggtcgacgaactggttgctgta
cgtcacttgaacgaatttaccgtcaaggctccggaagacgtgaccctgatggacgtgtcg
cccaagcaggtcgtttccgtcgctgcctcgctgattccgttcctcgagcacgacgacgcc
aaccgcgctctgatgggctcgaacatgcagcgtcaggcggtgccgactctgcgttcggac
aagccgctggtcggtactggtatggagcgcaacgtggcgcgcgactccggcgtttgcgtg
gttgcccgtcgtggcggtgtgatcgattcagtcgacgcgagccgtgtagtcgtacgtgtt
catgatggggaggtcgagaccggcgaagctggtgtcgacatctacaacctgaccaagtac
acccgttccaaccagaacacctgcatcaaccagcgtccgctggttcgcaagggtgacgtg
gtggagcgtggcgacatcatggctgacggcccttccactgatatgggggagctggcgctc
gggcagaacatgcgcgtcgcgttcatgccttggaacggctacaacttcgaagactccatc
ctcctctcggagcgtgtggttcaggaagatcgtttcaccactatccatatccaggaactg
acctgtgtgtcgcgtgacaccaagctcggtccagaggaaatcaccgcggacatcccaaac
gtgggcgaagctgcgctgaacaagctggacgaggcgggtattgtctacgttggtgccgaa
gtcggcccgggcgatattctggttggcaaggtgactccgaaaggcgaaacccagctgact
ccggaagagaagctgctgcgcgcgatcttcggtgagaaggcgtccgatgtgaaggacacc
tccctgcgtgtgccgactggcaccaaaggtaccgttatcgacgttcaggtgttcatccgc
gacggtgtcgagcgcgactcccgtgcgctggctatcgagaagatgcaactcgacgagatc
cgcaaggacctcaacgaggagttccgtatcgtcgaaggcgctaccttcgaacgcctgcgc
tcggctctggttggcgcgactgccgagggcggtgccggcctcaagaaaggtgctgtcatc
actgacgagatcctcgacgggttggagcatgggcagtggttcaagctgcgcatggccgaa
gatgcgctgaacgagcaattggaaaaggctcaggcctacatctccgatcgccgtcagctg
ctcgacgacaagttcgaagacaagaagcgcaagttgcagcagggcgacgacctggcgccg
ggcgtactgaagatcgtcaaggtctacctggcgatcaagcgtcgcatccagccgggcgac
aagatggctggtcgtcacggtaacaagggtgtcgtctcggtgatcatgccggtcgaagac
atgccgcatgacgccaacggcacgccggtcgacatcgtgctcaacccgcttggcgtaccg
tcgcgtatgaacgtcggtcagatcctcgaaacccacctgggcctcgccgccaagggcctg
ggcgagaagatcaatctgatgctcgaagagcagcgcaaggtcgccgagctgcgcaagttc
ctgcacgagatctataacgagatcggaggccgtcaggaaaatctggacgacctgagcgat
caggaagtgctggacctggccaacaacctgcgcaagggcgttccgatggctactccggta
tttgacggagccaaggagcgcgagatcaaggccatgctgaagctggctgatctgccagaa
agcggccagatgcagctgttcgacgggcgtaccggcaataaattcgagcgcaccaccacg
gtcggctacatgtacatgctcaagctgaaccacctggtcgacgacaagatgcacgcgcgt
tccaccggttcctacagcctggttacccagcagccgctgggtggtaaggcgcagttcggt
ggtcagcgcttcggggagatggaggtctgggcgctggaagcctatggcgccgcgtacacc
ctgcaggaaatgctcacggtcaagtcggacgacgtgaacgggcggaccaagatgtacaag
aacatcgtggacggcgatcaccgtatggaggccggcatgccggagtccttcaacgtgttg
atcaaagagatccgctcgctcggtatcgatatcgatctggaaaccgaataa
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integrated database retrieval system
