Stutzerimonas chloritidismutans: LLJ08_17900
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Entry
LLJ08_17900 CDS
T07923
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
pchl
Stutzerimonas chloritidismutans
Pathway
pchl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pchl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LLJ08_17900 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pchl03021
]
LLJ08_17900 (rho)
03019 Messenger RNA biogenesis [BR:
pchl03019
]
LLJ08_17900 (rho)
Transcription machinery [BR:
pchl03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
LLJ08_17900 (rho)
Messenger RNA biogenesis [BR:
pchl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
LLJ08_17900 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
AAA_22
AAA_25
NACHT
S1CSD-TOTE-2
AAA
Motif
Other DBs
NCBI-ProteinID:
UEG60980
LinkDB
All DBs
Position
complement(3813635..3814894)
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AA seq
419 aa
AA seq
DB search
MNLTELKQKPITELLEMAEQMGIDNMARSRKQDVIFSLLKKHAKSGEEISGDGVLEILQD
GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTIIGKIRPPKEGERYFALLKVDSIN
YDRPENAKNKILFENLTPLFANERLKMEAGNGSTEDLTGRVIDLCAPIGKGQRGLIVAPP
KAGKTIMLQNIASNITRNNPECHLIVLLIDERPEEVTEMQRTVRGEVVASTFDEPPTRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALEKPKRF
FGAARNIEEGGSLTILATALVETGSKMDEVIYEEFKGTGNLELQLDRRIAEKRVFPAINI
NRSGTRREELLTSEEELQRIWILRKLLHPMDESAAIEFLLDKLKDTKTNDEFFMSMKRK
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatctgactgaactcaagcaaaagcccatcaccgaactgctggaaatggccgaacag
atgggcatcgataacatggcccgttcgcgcaagcaggacgtgattttctccctgctcaag
aagcacgctaaaagcggcgaggaaatctccggtgatggcgtgctggagattctccaggac
ggcttcggcttcctgcgctctgcggattcttcctacctggccggcccggacgatatctac
gtctcgcccagccagattcgccgcttcaacctgcgcaccggtgacaccatcatcggcaag
attcgccctccgaaggaaggtgagcgctacttcgccctgctcaaggtcgactcgatcaac
tacgatcggccggagaacgcgaagaacaagatcctcttcgagaacctgaccccgctgttc
gccaacgagcgcctgaagatggaagccggcaacggttccaccgaagacctcaccggtcgc
gtaatcgacctctgtgctccgatcggcaagggccagcgcggcttgatcgtcgctccgcca
aaggcgggcaagacgatcatgctgcagaacatcgccagcaacatcacccgcaacaacccc
gagtgccacctgatcgttctgctgatcgacgagcgtccggaagaagtgaccgagatgcag
cgcaccgtgcgcggcgaagtggtcgcctccaccttcgacgagccgccaacccgtcacgtg
caggtcgctgagatggtgatcgagaaggccaagcgcctggtcgagcacaagaaggacgtg
gtcattctgctcgactccatcacccgtctggcgcgtgcctacaacaccgtgatcccgagc
tccggcaaagtgctcactggtggtgtcgatgcccacgccctggagaagcccaagcgtttc
ttcggtgccgcgcgcaacatcgaggaaggcggttcgctgaccattctcgccaccgcgctg
gtggagaccggctcgaagatggacgaggtgatctacgaggagttcaagggcaccggtaac
ctggagctgcaactggatcgtcgcattgccgagaagcgtgtcttcccggccatcaacatc
aaccgttcgggtactcgccgcgaagagctgctgaccagcgaggaagagctgcagcgcatc
tggatcctgcgcaagctgctgcatccgatggatgaaagcgctgcgattgagttcctgctc
gacaagctcaaggacaccaagaccaacgacgaattcttcatgtccatgaagcgcaagtaa
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