Stutzerimonas chloritidismutans: LLJ08_19150
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Entry
LLJ08_19150 CDS
T07923
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pchl
Stutzerimonas chloritidismutans
Pathway
pchl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pchl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LLJ08_19150
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pchl03019
]
LLJ08_19150
03400 DNA repair and recombination proteins [BR:
pchl03400
]
LLJ08_19150
Enzymes [BR:
pchl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LLJ08_19150
Messenger RNA biogenesis [BR:
pchl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LLJ08_19150
DNA repair and recombination proteins [BR:
pchl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LLJ08_19150
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RecQ_Zn_bind
ResIII
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
UEG61219
LinkDB
All DBs
Position
complement(4067530..4069470)
Genome browser
AA seq
646 aa
AA seq
DB search
MIEQTLKQTFGYDGFRPGQDQAIRAVVAGRSAAAIFPTGSGKSLCYQVPALLLPHLTLVV
SPLLALMQDQLAFLHRHGIAAASIDSAQSREQASETMARAKSGELKILMISVERLKNERF
RNFISQVPISLLVVDEAHCISEWGHNFRPDYLKLPDYQRQFNIPQVLLLTATATPPVIAD
MQAKFSIAPDDVVTTGFYRPNLNLLVEPVSGFNKQRRLVEWLADKSGQPTIVYVTQQKTA
EQVAEHLAQRGFPASAYHAGMAHELRESIQRRFMAGELNCIVATIAFGMGIDKSDIRNVV
HYDLPKSVENYSQEIGRAGRDGKPSDCLVLANRDSLSVLQNFVYGDTPEREGIRCVLDEL
LQAAAPDQKGSGQWELMLNQLSDQSNIRQLPLKTLLVQLELRGIISPRFAYFAEYRFKYL
LEPEVLVAKFEGERRQFVEAIVHSSARARTWCTLDFDALYQQHGADRGRVVKALEYFQEK
GWIELESKQMTDVYALLNPDFDAEGLSIELHEYFKQHEASEITRIDNMLALFESSECLSQ
RLAAYFGDQQAPQRCGHCSVCRGQVAQLPEPPALAPLNDVALDARCAEFSQRYTQLKGDA
PSAECLTRFLCGISVPVFTKLKARQIPGFASLEAYPYAEVRARLAG
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atgatcgaacagaccctcaagcagactttcggctacgacggctttcgtcccggccaggat
caggccattcgcgccgtggtggccgggcgctcggcggccgctatctttcccactgggtct
ggcaagtccttgtgttatcaggtgccggcgctgctattgccgcatctcaccttggtcgtt
tcgccgctgttggcgctgatgcaggaccagctagctttcctgcaccggcacggcatcgcc
gcagccagcatcgactcggcgcagagccgcgagcaggccagcgaaaccatggcccgcgcc
aagtccggtgaactgaagattctgatgatttcggtggagcggctgaagaacgaacgcttc
cgtaacttcatcagccaagtgccgatctcgttgctggtcgtcgatgaggcgcattgcatt
tccgagtgggggcacaacttccgcccggattatctcaagcttcccgactaccagcgccaa
ttcaatatcccgcaggtgctgctgctgaccgccacggcgacaccgccggtgattgccgac
atgcaggccaaattctcgattgcgccggacgacgtcgtgactaccggcttctaccggccc
aatctcaatctgctggtggagccggtcagcggctttaacaagcagcgccggctggtggaa
tggttggccgacaagagtggtcagccgaccatcgtctacgtcacccagcagaagacggcc
gagcaggttgccgagcatctggcgcagcgcggcttcccggccagcgcctaccacgccggc
atggcccacgagttgcgtgagtcgatccagcgccgcttcatggcaggcgagctgaactgc
atcgtcgccaccattgccttcggcatgggcatcgacaagtcggatatccgcaacgtggtg
cactacgacctgcccaagtcggtggagaactacagccaggagatcggccgcgcgggccgc
gatggcaagccatcggactgcctggtgctggccaaccgggacagcctcagcgtgctgcag
aattttgtctatggcgacacaccggagcgcgagggcatccgctgcgtgctcgacgagctg
ctgcaggcggctgctcctgatcaaaagggcagcggacagtgggagctgatgctcaaccag
ctatcggaccagagcaacatccgccagttgccgctgaaaaccctgctggtgcagctggag
ctgcgcggcatcatctcgccgcgcttcgcctatttcgccgagtaccgcttcaagtacctg
ctcgaacccgaggtgctggtggcgaaattcgaaggcgagcggcggcagttcgtcgaggcc
atcgtgcacagctcggcgcgggcaaggacctggtgcacgctggatttcgatgcgctctac
cagcagcacggtgcggaccgtggccgggtggtaaaggccctggagtacttccaggaaaaa
ggctggatcgagctggagagcaagcagatgaccgacgtctatgcgctgctcaatccagac
ttcgacgcagagggcttgagcatcgaactgcatgaatacttcaagcagcacgaagcgagc
gagatcacccgcatcgacaacatgctggcgctgttcgaatccagtgaatgcctgagccag
cggttggcggcctattttggggaccagcaggcgccgcaaaggtgtggccattgctcggtc
tgtcgcgggcaggttgcgcaacttcctgaaccaccggcgctggcaccgctcaacgacgtc
gctctcgacgcccgctgcgccgaattcagtcagcgctacacgcagctcaagggtgatgcg
cccagcgccgaatgcctgacgcgctttctctgcggtatcagcgtgccggtgttcaccaag
ctcaaggcgcgccagatcccaggtttcgcctcgctggaggcctatccctacgctgaggtt
cgcgcgcgcctagctggttag
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