Pochonia chlamydosporia: VFPPC_00173
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Entry
VFPPC_00173 CDS
T09407
Name
(RefSeq) transcription elongation factor spt6
KO
K11292
transcription elongation factor SPT6
Organism
pchm
Pochonia chlamydosporia
Brite
KEGG Orthology (KO) [BR:
pchm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pchm03021
]
VFPPC_00173
03036 Chromosome and associated proteins [BR:
pchm03036
]
VFPPC_00173
Transcription machinery [BR:
pchm03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
VFPPC_00173
Chromosome and associated proteins [BR:
pchm03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
VFPPC_00173
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SH2_2
HTH_44
HHH_7
Spt6_S1
YqgF
Tex_central_region
SPT6_acidic
S1
HHH_9
SH2
HHH_3
Tex_YqgF
Cullin_AB
S1_RRP5
Motif
Other DBs
NCBI-GeneID:
28844245
NCBI-ProteinID:
XP_018148206
UniProt:
A0A179G463
LinkDB
All DBs
Position
1:complement(<821476..>825891)
Genome browser
AA seq
1412 aa
AA seq
DB search
MSNSMRDLISGEAELDDEEDDESYDEETGEERVRRNGPRVDDSSEEEEDDDDEEEARKVR
EGFIVDEEEEEEEEDADSDAEPRPVKRKREHRDREEEARLDEDDLELIGEQFGERTKPES
KSKFKRLKRGHRDEDESPNERRGLDEIFSDEDEDAAEQRPYGRSNLRAQADEFDDFIEED
FPEDEDERTRRLEDLEVARPRDRGVGAVVDTTGLDKDALDDMEAIFGNGEDYDWALQLED
DEEDREQQEQGIELKDVFEPSQLKEKLLTDEDNEIRFTDEPERFQLERKAFKNLQLTADQ
FKEEAKWITNQLWPKKGLAQELQAPFGKAVGKVLEFFIVDEVEVPYVFQHRKDYLLHSKK
IRKSTRDDLDGPDYTIQSDKLLNQDDLWRILELDVKFRSFVDKRNSLEKTYENLKSLDVE
DQMIEEMIPEATTMEELQDLQDYVQFQYGAKLKDLAVMSGNVSQVKRPGSKSSLLDRVRN
GKTYYFVKAYGISADQLAKNALRQGKKITPDDDSQYPMDLADSLIDDNFSTGDQVISAAR
QMYSEELFASPRMRKYFRSSYYQAAELSCRRTDKGLRKIDDSHPYYEIKYLQNQAIADLV
HQPELFLKMMRAEEEGLVDIKVDMPPRYDFRRQLYQEFESENFSDRAEQWREERKKVLDV
AYPKLEKVIVKNVKEVIRTFCQDEVLKMCRQEFYRKLDQAPYKPKGMILGTTPRVLALSN
GMSDPAREPTCWTWVDEDGRVLEQGKFGNLARDEAQREEFAELVRRRRPDVIAVSGWSAE
TNRLIRDVEALVTDKDLRGAEFEDPETNDYRTEPLEVVIVDDEVARLYKDSPRAMAEHPA
LNPVTRYCVGLARYMQNPMKEYAALGKDVSSLSFHPCQHLLPQDKLMKYLDSAMVDTVNM
VGVNINDAMTSSYTANLLPYIAGLGPRKATSVIKAINANGGSVNTRDELVGDPDSGKLPV
VGPRVWNNCASFLYIDYDATNPSSDPLDNTRVHPEDYELGRKMAADALELDEEDVKAETD
ENGPGAIVRKLFKQDEQERVNELVLDEYADQLLTNFNQRKRATLEAISAELQAPYEELRR
SFAPLNQSEVFTMFTGETKSSLCEGMIVPVNVRMVRDDFAIVKLDCGIEGRVEAHEVTNR
ASVKEVLSTGQTAQAKILELNYKDFMAKLSMREDALRVPFKRPLNYGRDGWDYNLESSDK
EELREKDHSTGRTQRVVKHPNFKPFNSIQAEEYLGSQPSGEVIIRPSSKGNDHLAITWKV
ADNVYQHIDVLEMQKDTEFSVGKLLRIGGKYTYSDLDELIVDHVKAMARKVEELMRHDKY
QSRSRSETEKWLTTYIDANPNRSAYAFCIDPKHPGYFWLCFKASRTARVIGLPVRAIPQG
YELKGYQYPDMRALCNGFKLRYQNEFSKMGNR
NT seq
4239 nt
NT seq
+upstream
nt +downstream
nt
atgagcaacagcatgcgcgacttgatttcgggcgaggccgagttggacgatgaggaagat
gacgaatcatatgacgaggagactggggaggagcgggttagacgaaatgggccccgcgtc
gatgactccagtgaagaagaagaagacgacgatgacgaagaggaagctcgcaaggtacgc
gagggcttcattgttgatgaagaagaggaggaagaagaggaagatgccgactccgacgca
gagccacgccccgtcaagagaaaacgcgaacaccgggatcgcgaagaggaagcgcgcctt
gatgaagatgatttggagctgattggcgaacaattcggagaaagaaccaaaccagaaagc
aagtctaaattcaagcggctcaaacgtgggcatcgcgacgaagacgaatcccccaatgaa
cgacgtggcctggacgaaatcttttccgacgaagacgaagatgccgcagagcaacgccct
tacggaaggtcaaacctgcgcgctcaggccgacgagtttgacgactttatcgaggaagac
ttccccgaagacgaagacgagcgaacgcgccgattggaagatttggaggttgcacgaccc
agagaccgtggcgtaggcgccgttgtcgacaccacagggcttgataaagatgccttggat
gatatggaggccatctttggcaatggtgaagactacgactgggcgctgcaactggaagat
gacgaagaggaccgtgagcagcaagaacaaggcatcgagctcaaggacgtttttgagcca
tcacaacttaaggagaagcttctcacggacgaagataatgaaattcgatttacagacgaa
cccgaacgatttcaattagagcgcaaggcgtttaagaacctccaacttacggcggaccaa
ttcaaagaggaagccaaatggatcaccaaccagctgtggccgaagaagggcctggcccag
gagctccaggcgccattcggcaaggctgttggcaaggttctcgaattctttatcgtggac
gaggtcgaggttccatacgtcttccagcatcgcaaggactacctgctgcattcaaagaag
attcgaaaatcgacacgcgatgatctggatggtccagattataccattcaatcagataag
ctacttaaccaagacgatctgtggaggattctggaactggatgtcaagttcagatccttt
gtcgacaagagaaattctcttgagaagacgtatgagaacctgaagtcgcttgacgtggaa
gaccagatgattgaagagatgatccccgaggctacaaccatggaagaacttcaagacttg
caggactacgttcagtttcaatacggcgcgaaactgaaggaccttgctgtcatgtcgggc
aacgtgtcccaggtcaagagaccaggctccaagtcttctctgctcgaccgcgtgcgcaac
ggcaaaacgtattatttcgtcaaggcgtacggtatctctgctgatcagttggcgaagaat
gctctacgacaagggaagaagatcacaccagatgacgactcccaatatcccatggatctt
gctgatagcttgatcgacgataactttagcacgggggatcaggtaatttccgctgctcgt
caaatgtactcggaagaactgttcgcaagccctcgcatgcgcaagtacttccgcagctcg
tactaccaggcagcagagcttagctgtcggcgtacggacaagggtctgcgaaagatcgat
gattctcatccgtactacgagattaaatatttgcagaatcaggcgattgctgatctggtg
catcaaccagagctcttcctcaagatgatgcgagctgaagaagagggcctagttgacatc
aaagtggatatgccgccaagatacgatttccgccgacaactctatcaagaattcgagtcc
gagaacttcagtgatcgggccgagcaatggcgagaggagcgcaaaaaggttctcgacgtt
gcgtacccgaaactggaaaaagtcattgtcaagaacgtcaaagaggttatccgtactttc
tgccaagatgaagttctcaagatgtgccgccaagagttttaccgaaagttggatcaggct
ccctacaagccaaaggggatgattctcggaacgacacctagagttttggccctgtcaaat
ggaatgagcgacccagctcgcgagccaacgtgctggacgtgggtggatgaagatggtcga
gtcctcgagcaaggcaagtttggtaacctggctcgagatgaagcccagcgagaggaattt
gccgagttggtccgacggcgccgtccagatgtcattgccgtcagcggttggagtgctgaa
actaacagactgatacgagatgttgaggcactcgtaaccgacaaagatctccgaggagcc
gagttcgaggatcctgaaaccaatgactacagaacggaacctctggaagtagtcattgtg
gacgatgaggttgctcgcctgtacaaggacagtccccgtgcgatggccgaacacccggcc
ctgaacccagtgacaagatactgcgttggcttggcgcggtacatgcagaaccctatgaag
gagtatgccgcccttggcaaggacgtctcatcactgtcattccatccttgccagcatctc
ttgccgcaggataagctgatgaagtaccttgactcagccatggttgatactgtcaacatg
gtcggagtgaatattaatgacgccatgactagctcttacactgccaacctgttgccttat
attgctggtttgggtcctcgaaaggccaccagtgtcatcaaggcaataaatgccaacggc
ggatcagtaaacactcgagatgaactcgtcggtgatcctgacagcggcaagttgcccgtt
gtcggacctcgcgtttggaacaactgtgccagtttcctctacatcgactatgatgccacc
aacccatcatctgaccccctcgacaacacacgagtccaccctgaagactatgaacttggt
cgcaagatggctgctgatgcattggagctggatgaagaagacgtcaaggccgaaacggac
gaaaacggacctggagcaattgtgcggaaactcttcaagcaagacgagcaagagcgagtc
aacgaacttgtccttgacgagtacgctgatcagttattgaccaactttaatcagcggaag
cgtgcgacactggaggccatcagcgcagaactccaagccccttacgaagaattgcgaaga
agctttgcgccactgaaccagtccgaggtctttacgatgtttaccggcgagaccaagtcg
tcactatgcgaaggcatgattgtgcctgtcaatgttcgcatggtccgagacgactttgcc
attgtcaagcttgactgtggtattgaaggtagggttgaggcgcacgaagtcacaaatcgc
gcctcggtcaaggaggtcttgagcactggccagactgcacaggccaagattctggagctg
aattacaaagatttcatggcaaagctatccatgcgggaggatgcactgcgggtgcctttc
aaacggccattaaactacgggcgtgacgggtgggactacaaccttgaatcatcagataag
gaggagcttcgtgagaaagaccacagcacgggaaggacgcaacgagttgtcaagcacccc
aacttcaagcccttcaactcgatacaggcggaggagtatcttggctcacagccgtcgggt
gaggtgattattcgcccctcatccaagggcaacgaccatttggccattacgtggaaagtc
gccgacaatgtgtaccagcacatcgacgtgttggagatgcaaaaggacacagagttctct
gttggcaaacttttgcgaattggtggcaagtacacatacagtgatcttgatgagttgatt
gtggatcacgtcaaggcaatggcacgaaaggttgaggagctcatgcgtcatgacaagtat
cagagcaggtcaagatccgagacggagaaatggctaaccacatacattgatgccaatccc
aaccgatccgcatatgccttctgcattgatccgaagcatcctgggtatttctggctctgc
ttcaaggctagcagaacggctagggttattggcctccctgttcgtgctattccgcaaggt
tacgaattgaagggataccagtatcctgacatgcgtgcgttgtgcaacggcttcaagcta
cgataccagaacgagttttcgaagatgggaaaccggtaa
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integrated database retrieval system
