Pochonia chlamydosporia: VFPPC_00272
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Entry
VFPPC_00272 CDS
T09407
Name
(RefSeq) RNA recognition motif containing protein
KO
K14407
cleavage stimulation factor subunit 2
Organism
pchm
Pochonia chlamydosporia
Pathway
pchm03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pchm00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
VFPPC_00272
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pchm03019
]
VFPPC_00272
Messenger RNA biogenesis [BR:
pchm03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
VFPPC_00272
U7-dependent histone pre-mRNA processing factors
VFPPC_00272
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CSTF2_hinge
RRM_1
CSTF_C
RRM_7
Spo7_2_N
Motif
Other DBs
NCBI-GeneID:
28844316
NCBI-ProteinID:
XP_018148335
UniProt:
A0A179G302
LinkDB
All DBs
Position
1:<1205974..>1207061
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AA seq
323 aa
AA seq
DB search
MSTRPPSRVVFVGNIPYGLSEEQITEIFSRAGKVERFRLVYDSETGRPKGFGFADYPDTG
SSNTRLPRVHQIHSTDLVLPPLDSASSAVRNLNDFEVMGRKLRVDFSNEQKSGDDDNNLS
TANPTNGAATSTYAAQASSLPPLPAGKEIPPGLTCTDAISRTLNTLPPSQLLDILGQMKT
LATTEPQRATELLQQAPQLSYAVFQALLLMGLVSPEAIQSVADPTAPIPAVQQPAPAYPG
SAAVSGYPGANNTPPVAAMPYAPPAAQPSYGAPAAPAPAAAAQDPDALMRAVMDLTQAQI
DMLPEADKQQIMALRATFAGQRR
NT seq
972 nt
NT seq
+upstream
nt +downstream
nt
atgtcaacgaggccaccttcccgcgtagtgttcgtggggaatattccttatggcctctca
gaagagcaaatcacagaaatcttcagccgcgccggcaaagttgaacgattccgactagta
tacgattcggaaactggccgcccaaagggcttcggctttgcagactacccagataccggt
tcgtcgaatactcgcctgccccgagtccaccaaattcactctactgacctcgtccttcct
cccctagatagcgcttcgtccgcggtacgaaacttgaacgactttgaggttatgggtcgc
aagctccgcgtcgatttttctaatgaacaaaagagcggcgatgatgacaacaatctctct
acagcgaatcctacaaatggtgcagccaccagcacatacgccgcgcaagcaagctctcta
cctccccttcctgccggcaaagaaatacctcccgggctgacctgcacggatgccatctca
cggacactcaacactcttcctccctcccaactactcgatatcctaggccagatgaagacg
ctggctacaaccgaaccccaaagagccacagaactgctccaacaagcaccgcaactttct
tatgctgtattccaggcgctgcttctgatggggctggtctcccctgaggcaattcaatct
gttgctgatcccacagcacctattccagcagtacaacaaccggcaccagcctatccaggt
tcggcggcagtgtcaggctacccgggtgcaaacaacacaccaccagtcgctgcgatgcct
tatgcgccccctgcagctcagccgagttatggcgcaccagcagcgccagcgccagcagca
gcagctcaggaccccgatgcgctgatgagagcagtcatggatttgacacaagcccaaatc
gacatgctacctgaagctgacaagcaacagatcatggccctaagagctacgtttgcaggt
cagcggagatga
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