Pochonia chlamydosporia: VFPPC_00297
Help
Entry
VFPPC_00297 CDS
T09407
Name
(RefSeq) mRNA cleavage and polyadenylation specificity factor complex subunit
KO
K06100
symplekin
Organism
pchm
Pochonia chlamydosporia
Pathway
pchm03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pchm00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
VFPPC_00297
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pchm03021
]
VFPPC_00297
03019 Messenger RNA biogenesis [BR:
pchm03019
]
VFPPC_00297
Transcription machinery [BR:
pchm03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
VFPPC_00297
Messenger RNA biogenesis [BR:
pchm03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
VFPPC_00297
U7-dependent histone pre-mRNA processing factors
VFPPC_00297
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SYMPK_PTA1_N
Motif
Other DBs
NCBI-GeneID:
28844338
NCBI-ProteinID:
XP_018148370
UniProt:
A0A179G3F5
LinkDB
All DBs
Position
1:<1296766..>1299198
Genome browser
AA seq
725 aa
AA seq
DB search
MSSNLSVPEQIRQLNDARKLVLGDVKYYPSVVRGLLPIIGPNAHIELRRWGAEFLAEAFS
TPALPNGEKETMQLYVLATVESLLENEREDPQVLRSVIQTAASIYPLALRWIINNGYDTV
TWDKMLSIKQRILRLWENAVPSVRISCIKFAQRVVLAQTVSTGAEYRHAGTLDVSLDKVP
PNHQSLDPRNLEAEASGLLDRMLGVLQESTDALVVDATLNCLSILVRTRPATSSRIINAL
LSFNPLQLANSPLTPRSKVMIKSMEKTARLLLLHLTKRDPHNPIVPRIHQHIERTMRMVM
EVLDDSGRKRPLDAQQHDGYDAKRQRVTGSHIPQIPSLGPGPHSLADIFTLVGHDGLKSF
DLSQVPAAMVAKVTVTALSRIDPQLLSKAVDGVRARLTTLANAPAPELNPNTAPLGVDDD
DDDYEPDFYQAEDTEQILNKLDGASPSLPSELTALDGGLSLTSFSLPQPPQLTPELALSA
GSGTVAKVVDMMKSLEEPAAKKNKAGFIRLAASSGSKDAWMTILTRLATRASTGLEEISV
KGEEDESLRQPCLSSNIREVLYNYVMEDFRKHIDVAVSWLCEEWYNDKMQARLGGDHPKN
YEKNTLRLINGFLPYLHPQDKILTRFLSEIPELNRAMLSRVKDMCRDPSVTQLALTSLLY
LAMMRPPVKELALDTVQDIWTEFEDARPMAGKYLSKYRPGFVEAAEANANRDNSGLESSG
TAIAT
NT seq
2178 nt
NT seq
+upstream
nt +downstream
nt
atgagctccaatctgtccgtcccggagcagatccgacagctcaatgatgcgcgaaagctg
gtgcttggcgatgttaagtattatccgagtgttgtgagaggtcttcttccgatcattggt
cccaatgcgcacatcgagcttcgacgatggggggccgagtttttggcagaggcgttttca
acgcctgcgctgccaaatggggagaaggagacgatgcagttgtacgtgctggcgaccgtg
gagtcgcttctggagaatgagagggaggaccctcaggttttgcggagtgttattcagaca
gcagccagtatttacccgcttgcattgcggtggataataaataacggatacgatacggtc
acatgggacaagatgttgagcattaaacagagaatactgcgactatgggaaaacgcagtc
ccttcggtgcgaatcagctgtataaagttcgcccaaagagtcgttcttgcgcagaccgtc
tcaacgggtgctgaatatcgacatgctggaactcttgatgtctcactagacaaggttccc
cctaatcatcagtcgctcgatcctagaaatctcgaggctgaagcttccggacttcttgat
cgtatgcttggcgttttacaggagagcactgacgctctcgttgttgacgctacactcaac
tgtctgtcaatccttgtacgaaccagacctgcgacttccagccgaattatcaacgccctt
cttagcttcaaccccctacaattagcaaactctccattgacaccgaggagtaaagtcatg
ataaagtccatggagaagactgcgagattattacttttgcatctcaccaagcgggatcct
cataatcccattgtaccgaggatacaccaacacattgaacgtaccatgcgcatggtgatg
gaagtcttggacgactctggcagaaagcgaccactagatgctcaacaacatgacggctat
gacgccaaacgacagcgagtaactgggtcacatatcccacaaatcccatcccttgggcct
gggccacacagcttggccgatatatttacactcgtaggccacgatggtttaaagtcgttt
gacttgtcacaggtcccggctgccatggtagcaaaggttactgtcactgcattgtcacga
atagaccctcaattattgtccaaggccgttgacggcgttcgggcaaggctgactacatta
gctaatgctcccgctccggaattaaaccccaatactgcgccgctgggtgtcgatgacgac
gatgacgactatgaacctgatttctatcaagcggaagataccgagcaaattctgaacaag
ctggacggtgcatcgccatcactaccctcggaactgactgctctggatggcggactgtcc
cttacatcattcagcttaccccaaccgccccagcttacaccagaattggcgctgagcgct
ggaagcggaaccgtagcaaaggtggttgacatgatgaaatcactggaggaacccgccgcg
aagaagaacaaagccggtttcatccgattggcagccagctcagggagcaaagatgcctgg
atgaccatattgactcgacttgcaacacgagcttccactggattggaggaaatttctgtc
aaaggagaggaagacgaatcattacgacaaccgtgtctaagcagcaatattcgagaagtc
ctgtataactacgtcatggaggattttcgaaaacatatcgatgtcgctgtgtcatggctc
tgtgaggagtggtataatgacaaaatgcaagctcgattgggcggcgatcacccaaagaat
tacgagaagaatacattgcgactgataaatgggtttcttccgtacctacacccgcaagac
aagatcttgacaagattcctaagcgaaataccggagcttaatcgtgcaatgctttctaga
gtcaaggacatgtgtcgggaccctagcgtcacgcaactggccctgacgagtttgctgtat
ctggcgatgatgcgacctcctgtgaaagaactagccctcgacactgtacaggatatttgg
acggaattcgaggatgccagaccaatggcgggcaagtacttgtccaagtaccggcctgga
ttcgtggaggcggccgaagccaatgccaacagagacaactccggtttggaatcgtcagga
acggccattgcaacataa
DBGET
integrated database retrieval system
