Pochonia chlamydosporia: VFPPC_00348
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Entry
VFPPC_00348 CDS
T09407
Name
(RefSeq) pre-mRNA splicing factor ATP-dependent RNA helicase prp16
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
pchm
Pochonia chlamydosporia
Pathway
pchm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pchm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
VFPPC_00348
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pchm03041
]
VFPPC_00348
Enzymes [BR:
pchm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
VFPPC_00348
Spliceosome [BR:
pchm03041
]
Complex C
Other components
Step II factors
VFPPC_00348
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
AAA_30
ResIII
ATPase
nSTAND3
GAD
T2SSE
SLFN-g3_helicase
Flavi_DEAD
SRP54
PhoH
AAA_24
ABC_tran
TrwB_AAD_bind
AAA_29
Motif
Other DBs
NCBI-GeneID:
28844379
NCBI-ProteinID:
XP_018148430
UniProt:
A0A179G3L9
LinkDB
All DBs
Position
1:complement(1468844..1471771)
Genome browser
AA seq
975 aa
AA seq
DB search
MAGDRDYDGYNPKRRRLDSSRPPHKFQDGSRGSTPRAQSSYAATPTRESDNQGPDEEDML
ALDRDWYGGDELGGHAFGDDTHNPFASYEISAWESQQQESAKAEKMASRYDARQEQRRKE
NDAWETNRMLVSGVAQRRDMASDFDDDEATRVHLLVHDLRPPFLDGRTIFTKQLEPVPAV
RDYQSDMAVFSRKGSKVVREARQQSERQKQAQQATSITGTTLGNIMGAKDNDEDSALPGP
GEEDAEKGESKSNKFSEHLNKSKGASDFSRTKTLQEQRQYLPAFAVREELLRVIRENQVT
IVIGETGSGKTTQLTQFLYEDGYGRTGMIGCTQPRRVAAMSVAKRVAEEMDVELGTTCGY
AIRFEDHTSKETVIKYLTEGILLRESLNEPDLDRYSCIIMDEAHERALNTDILLGLFKKI
LQRRRDLKLIVTSATMNAKRFSDFFGGAPEFTIPGRTFPVDTMFHRSPVEDYVDQAVQQV
LAIHVSMDPGDILVFMTGQEDIEITCELVQKRLDALNDAPKLSILPIYSQMPADLQAKIF
DRAPPGVRKCIVATNIAETSLTVDGIKYVVDAGYSKMKVYNPKMGMDTLQITPISQANAS
QRSGRAGRTGPGKAFRLYTEKAFKEELYLQTIPEVQRTNLSNTVLMLKSLGVKDLLDFDF
IDPPPQDTISTSMFDLWALGALDNLGELTELGRKMSAFPMDPSLAKLLITAEQYGCSEEM
ITIVSMLSVPNVFYRPKERQDEADAQREKFWVHESDHLTYLQVYQAWKAHGFSDGWCIKH
FLHSKSLRRAKEVREQIVDIIKSQGMEMNSCGMDWDIIRKCICSGYYHQAAKYKGSGEYI
NLRTNLAVQLHPTSALYAGHPPDYVVYHELILTSKVYVSTVTAVDPHWLADLGGVFYSVK
EKGYSIRNKRITETEFNRKMEIEAKMAEDKRRDEERKQAEEEKAVVKKKLPTDGKKIVTQ
GAVKKPVIKRRGRGF
NT seq
2928 nt
NT seq
+upstream
nt +downstream
nt
atggctggggaccgagattacgatggctacaacccgaaaaggaggcgattggactcatcg
cgaccgcctcacaagtttcaagatggatctcggggctcaacacctcgagctcaatcgagt
tacgccgcaacgcctaccagagaatcggataaccaagggcctgacgaagaagatatgtta
gcattggatcgagactggtacggaggcgacgagctgggcggacacgcatttggcgatgat
actcacaatccttttgcgtcgtatgagatttccgcctgggagagccaacaacaagagtca
gccaaggcagagaagatggcgagccgctacgacgccagacaagaacaacgccgcaaagaa
aatgatgcctgggaaacaaacagaatgctggtctctggcgtcgcccagcgaagagatatg
gcatcagactttgacgacgacgaggcaacccgagtacatttactggtgcatgatcttcga
ccaccttttcttgacggacgaaccatctttacgaagcagcttgagccagttccagccgta
agagattatcaaagcgacatggcggtgttcagtcgcaaaggtagcaaggttgttcgagag
gcccggcagcagagcgagcgccaaaaacaggctcaacaagcaacgagtatcaccggcaca
acattgggcaacatcatgggcgcaaaagataacgatgaagatagcgcattacctgggcct
ggcgaagaagatgccgagaagggggaatccaagagcaacaagttcagcgagcacttgaat
aaatccaaaggtgccagtgacttcagcagaaccaaaacgcttcaagaacagcggcagtac
ctgccagcctttgcggtccgagaagagctgcttcgagtaatcagagaaaatcaagtcacc
attgttatcggagagacgggttcgggaaagacgactcagttgacacaatttctgtacgag
gatggctacggacggacaggcatgatcggctgcacccagcccagacgtgtcgctgccatg
agcgtggcgaagcgcgttgccgaagagatggatgttgagctgggcactacatgtggttat
gctattcgttttgaagatcacacaagcaaagagacggtcatcaaatatctgacggaaggt
atcttgctcagggagtctctcaatgagcccgatctggacagatactcttgcatcattatg
gatgaggcgcacgaacgggctctaaatactgatattctgctggggttgttcaagaagatt
cttcaacggcgtcgagatctcaaactcatcgtgacttcagcaacgatgaatgcgaaaaga
ttttccgatttctttggcggtgctccagaatttacgattccgggacgaacatttcctgtc
gacaccatgtttcatcggtcaccagttgaggattacgtggaccaggcagtccagcaagta
ttggctatacacgtttccatggatccaggagacattttggtgtttatgactggacaggaa
gatattgaaattacatgtgaactggttcagaagcggttggatgcactgaatgatgcgcca
aaactgagcattcttcccatttacagtcaaatgccggcagacctgcaagccaagattttc
gaccgggctcccccaggggtacgaaaatgcattgtggccacgaatattgccgagacgagt
ttgacggtcgacggtatcaagtatgtagtcgacgcaggatattcgaaaatgaaggtgtat
aatcccaaaatgggtatggatacgcttcagatcacgccaatctcccaagccaatgcttca
cagcgctccggtcgtgcgggcagaacaggaccaggaaaagcattccgcctttacactgag
aaagccttcaaggaggagctctacctccaaacgattcccgaggtccagcgtacgaacctg
tccaacacggttctaatgctaaagtcgctgggtgtaaaggatctgctcgactttgatttc
atagacccccctccccaagatacgatttccacgtccatgttcgacctctgggcactaggt
gctctagacaatttaggggagcttacggaattgggacgcaaaatgagtgccttccccatg
gacccatccctggctaagcttctcattactgcagagcaatatggctgcagcgaagaaatg
ataaccattgtctccatgctttccgtccccaacgtgttctatagaccaaaggagcggcaa
gacgaggcagacgctcaacgagaaaagttctgggtacacgagtcagatcacttgacatat
ctgcaagtataccaggcttggaaggctcacggcttctcagacggctggtgcatcaaacac
tttcttcattccaagtcgctgcgccgcgccaaagaagtcagggagcaaattgtggacatt
atcaagtcccagggaatggagatgaacagctgcggtatggattgggacattatccgaaaa
tgcatctgctcaggctactatcaccaggcggcgaagtacaagggttccggcgaatacatc
aatctccggactaatctagctgttcaacttcatcctacaagcgcactttacgccggccat
cctcccgattacgtggtctaccacgaactcattctcacttcgaaggtctacgtgtctacc
gtcacggcagttgatccccactggctcgcggacctaggaggcgtgttctactcggtcaaa
gaaaaggggtattctattcggaacaaacgcatcacagaaaccgagttcaatcgcaagatg
gaaatcgaggcgaaaatggcagaggataagcggagagacgaagaacgcaagcaggcagag
gaagagaaggcagtggttaagaagaagcttcctacggatgggaagaagattgtcacacag
ggagccgtcaagaagcctgtcattaaacgaagaggcagggggttttga
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