Pochonia chlamydosporia: VFPPC_00444
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Entry
VFPPC_00444 CDS
T09407
Name
(RefSeq) RecQ family ATP-dependent DNA helicase
KO
K10901
bloom syndrome protein [EC:
5.6.2.4
]
Organism
pchm
Pochonia chlamydosporia
Pathway
pchm03440
Homologous recombination
pchm03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
pchm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
VFPPC_00444
03460 Fanconi anemia pathway
VFPPC_00444
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pchm03032
]
VFPPC_00444
03400 DNA repair and recombination proteins [BR:
pchm03400
]
VFPPC_00444
Enzymes [BR:
pchm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
VFPPC_00444
DNA replication proteins [BR:
pchm03032
]
Eukaryotic type
DNA Replication Termination Factors
Other termination factors
VFPPC_00444
DNA repair and recombination proteins [BR:
pchm03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecQ family DNA helicases
VFPPC_00444
Bloom's syndrome complex (BTR)
VFPPC_00444
FA (Fanconi anemia) pathway
VFPPC_00444
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
RQC
ResIII
HRDC
Motif
Other DBs
NCBI-GeneID:
28844452
NCBI-ProteinID:
XP_018148560
UniProt:
A0A179G3V4
LinkDB
All DBs
Position
1:1826382..1831004
Genome browser
AA seq
1540 aa
AA seq
DB search
MSPNPSLDFTDFDADDLECMDLTKDLTGVTASTERSDDVQMWDTESALWSPPPRSGKKRK
SNDISRAQGVQKETFPDVYDILGTEPPASTPGSRSALRRAGLTSTSKSRRKRDIQETSED
VLGDLGSDSLQDLMVGMSSPSRHVSDRRDQGLNLRTPKKKPPSQETDSNKKRKANPYEEI
LPQDKFETNGASMEAVDDHDCIPDSDEEFLTPPSHNASVVWQEKKSSLSARKDPGPNPIS
RNQDSAVVSAMNSPFLQSHNRNGADSTGIASSFSTDSTKSDALDFTPEQTIPSSQVPKVL
EYLSTNSEALAERRETILQAIQRNGSDFLKAINERWPKERRSQIKIEKERLLRQQKATQE
LADALQSYKELWDKREALAQRVAQSYADGIDTDDDEIRLDELTDVVQEREEGLAKLVIAA
GFDESTLPMLTPPPSSTPKRGNNVVLGTQPLGAGEVRMPRSSRDSPAQALSSQVVHQTQL
PGGSQLLTRQTAPQSVHKNSNRTLISRDDEALTEELFPRETLPPTEGARTRRVRIASPAM
PEMEDDMFSDFDESDLRPAAITRTKNPSTHSTRPPNPGHAHDNFSDFSDDDDMLAFAQDY
ETHQSFETKAPGSRHVFSETSGNIMPPPKQKAQNKRPLAPALPELRIPPELMKHSWSPEV
QKMLKDRFRMKGFRHNQLEAINATLGGEDAFVLMPTGGGKSLCYQLPAIVRTGKTRGVTI
VVSPLLSLMQDQVDHMKALGIQAVAFNGECSAEYKRQVMSAFNERSPEHFIELLYVTPEM
VSKNAAFNNAMQTLHRRGKFARLVIDEAHCVSQWGHDFRPDYKTLGQVRTKFSNVPVMAL
TATATQNVIVDIKHNLGMVNCQVFSQSFNRPNLYYEVRTKTSNSNATESIASLIKAKYRN
VTGIVYTISRKQAEDVAQKLSGHGIAARHYHAGIDPQEKVEVQTSWQKGDVKVVVATIAF
GMGIDKPDVRFVMHHGLPKSLEGYYQETGRAGRDGKPSDCILFYGKADIRVLKKLIADGD
GNDEQKERQMVMLNRVTAFCDNKSDCRRTEVLRYFGEDFVPSQCQKACDNCQAGLIFEQQ
DFSTFAIAAIRVVQVQQRLTANQCADILLGKKYPNHEERLSDEHYGMAKGLKKHEVVRVI
DKLSAEKAFHENNVVGNYGVAIQYLKMGSTARLFLTGQRKLMLTIQVDEEAGTRTKPKAK
KSTKKKSKEQDTSAMQSTYVSSPVERRKRRTRAAESDEEENFPTTSHGYANDGFVVSDDD
MQQEDNEEDEDAFEPLPKHRPAKPPSKAAGKKKAAPPGPPITSDKRMEDLPEIHQDLVNT
FVREARKVEEHIRNKKELRRPLFTERDFREMAINWTMSLDRMSRIPGIDASKVREHGSKL
LPILKRHHDLYQEVMGADDPDGNDDDQEVVDLISSDLEFDEEELDQAGEGVDSHYFQPKS
RPEVEAFHSRLQGLSSQQQSQQKPKSSYTRGSGGGRKFSGGKKWPRKASGGGVPKRKGNN
FGGRKASGSSSTSRSTAGSSSKRDGKIVKKSGGGIGLMPL
NT seq
4623 nt
NT seq
+upstream
nt +downstream
nt
atgtcgccaaacccaagcttagacttcaccgatttcgacgcagatgatctggaatgtatg
gacctcacaaaagatctcactggtgtaacagcctcgacagaaagaagtgatgatgtccag
atgtgggataccgagagtgcattatggtcgccaccaccccgtagcggcaagaaacggaag
agtaacgacattagtcgagctcagggcgtgcaaaaggagacctttcctgatgtatacgat
atcctcggcaccgaaccccctgcctcaactcccggatcgcggtcagcactacggcgtgcc
ggattgacaagcacttcaaaatcacgtcgcaaacgagacatacaggaaacgtctgaggat
gtcttaggcgacctgggcagcgactcccttcaagacttgatggtgggaatgtcctcacct
tctcgccatgtgtctgatagacgggatcaggggttgaatctgagaacgccaaagaagaag
cctccatcacaagaaacggacagcaataagaaaaggaaggcgaacccatacgaggagatt
ttaccacaggacaaatttgagacaaatggagcatccatggaagcggtggatgatcatgac
tgtattccggattcggacgaggaatttctcacaccaccttcacataatgcatctgtcgtt
tggcaggaaaagaagtctagtttaagtgctcggaaagatcccggacccaacccgatttcc
cgaaatcaagacagtgctgttgtgagtgctatgaactcgccattccttcagtcccataat
cggaacggagcagactccacaggcattgcctcgagctttagcacggacagcaccaaaagc
gatgcattggatttcacccctgagcaaactattccttcaagccaagtaccgaaggttctc
gaatatttatctacaaactcagaagctctggctgaacggcgcgaaaccatcttgcaagca
atccagcgcaatggcagtgactttctgaaagccatcaacgagaggtggccaaaggagaga
cgcagtcaaattaaaatcgaaaaggaacggcttctgaggcagcagaaagcaactcaagaa
ctagcggacgctttgcagtcatacaaagagttatgggacaaaagagaagctctggcccaa
cgggtggcgcaatcgtatgctgacggcattgatactgacgatgacgagattcgacttgac
gaactgacagatgttgtacaagaacgtgaggaaggtctcgcgaaacttgtgattgcagct
ggattcgacgaatctaccttgcccatgcttacgccgccgccttcttcgacaccaaaacgg
gggaacaatgtggtacttggcacacagccgttgggtgcaggagaagtccgcatgccgcgt
agctcgcgagactctccggcacaggctttgtcttcgcaagtcgtccatcagactcaactg
cctggcgggtcccagctgttgacgcgacaaacagcaccacaatcagtgcacaagaattcc
aacagaactttgatatcaagggatgacgaagccctcacagaagaactattccctagagag
acgctgccgccaacagaaggtgccaggacacgtcgagttcgcattgcctcacctgcaatg
ccggaaatggaagacgacatgttctccgactttgacgagtctgacttgcgaccagcggcc
ataacacgaacaaagaatccatcaacacactcaactcgtcctcctaatcccggccacgca
catgataatttcagcgatttcagcgacgatgatgacatgttggcgtttgctcaagactac
gagactcaccagtcgtttgagaccaaagccccagggtctcgccacgtcttctccgaaact
tcgggaaacataatgcctcctccgaaacaaaaagcacaaaacaaacggccgctcgcacct
gccctaccagagctcaggattccaccggaattgatgaagcactcgtggtcaccagaagta
cagaaaatgctcaaagaccggttccgaatgaaggggttccggcacaatcagctagaggct
atcaatgcgaccttgggaggtgaagatgcatttgttctgatgccaactggaggcgggaaa
tccttgtgctaccagttgccagcaattgtcagaaccggaaaaacaagaggggtaaccatc
gtcgtgtcccctttgctgagtctgatgcaagaccaggttgaccacatgaaggcccttggc
atacaggctgttgccttcaatggagaatgctctgcagagtacaagagacaagttatgagc
gcctttaacgaacggagcccggaacacttcattgagctactatatgtcacgcctgagatg
gtgagcaagaatgctgcttttaataatgcgatgcaaaccctgcatcgtagaggcaaattt
gctcggctggtcatcgatgaagctcattgtgtcagccaatggggccacgactttagacca
gactacaaaactcttggtcaagtccgaacgaagttctcaaatgttcctgtgatggctctg
acggccacggcgacgcaaaatgtgattgtggacatcaaacacaacttaggcatggtcaat
tgccaagtgttctcgcaaagttttaatcgtccaaacctgtactatgaagttcggacaaaa
acgtctaattcgaacgctaccgagagcattgcttcattgataaaggcgaagtatcgcaac
gtcactggaattgtgtacacaatttcaagaaagcaggccgaggatgttgcccaaaaactc
tctggccacggaattgccgcccgccactatcatgcaggtattgaccctcaagagaaagtc
gaagttcaaacatcctggcaaaaaggggatgtcaaggtggttgttgccaccatcgctttt
ggtatgggcatagacaaacctgatgtcagatttgttatgcatcatggcttgcccaagagc
ttggaaggttactaccaagaaacgggccgggctggtagagatgggaaaccctccgactgc
attctgttttatggaaaagcggacataagagtcctgaaaaagctaattgcagacggtgac
ggcaatgacgaacagaaagaacgccaaatggttatgcttaaccgtgtcacagccttctgt
gataataaatcggattgtcgacgcactgaggtccttcgctattttggagaagactttgtg
ccaagccaatgccaaaaggcgtgcgataattgccaggctgggttaatctttgaacagcaa
gacttttcaacatttgctatagctgctattcgggttgtgcaagtgcagcagcgtctgaca
gctaatcagtgtgcagacatcctgcttggcaagaaatatccgaaccacgaggagaggctt
tcagacgagcactatggtatggccaaaggattgaaaaagcatgaagtggttcgggtgatt
gacaagttgtcggctgagaaagcctttcacgaaaacaatgtcgttggaaactatggcgta
gccattcaatatttgaaaatgggatctaccgcccgcctatttctcactggccaacggaag
ctcatgctcacgatccaagttgatgaagaagcaggcacacggacgaagccaaaggctaaa
aagtcgaccaaaaagaagtccaaggaacaagatacctcggcgatgcagtcaacgtatgtc
tcatcaccagtggagagacgcaaaaggaggacaagagccgcagagagcgatgaagaagaa
aatttcccaaccacttcccatggctatgccaatgatggatttgttgtctcagacgacgac
atgcagcaagaggataatgaagaggatgaagacgcgtttgaacctcttcccaagcaccgt
cccgcaaagccaccatccaaagccgcgggaaagaagaaggccgcgccgccaggacctccg
atcacttctgacaagcgaatggaagatctgccagaaatccaccaagatctagttaacacg
tttgtcagggaagctcgaaaagtggaagaacacatccgcaataagaaagaactcaggcga
cccttattcactgagagagactttcgagaaatggccatcaactggacaatgtctctggac
agaatgagtagaattcccggcatcgacgcgagcaaagtccgagagcatggatcaaaatta
cttccaatcctgaaacgacatcacgatctatatcaagaagttatgggagccgatgacccc
gacggcaacgatgacgaccaagaagtagtcgatttgataagctcagatctagagttcgac
gaggaagagctggaccaggcaggagaaggcgtcgactcgcactactttcaacccaagtca
cgacccgaagtagaagcctttcacagtagactccagggtctaagcagtcagcagcaaagt
caacagaagcccaaatcgtcatacacgcgcggttccggtggtggcaggaaattctccggc
ggcaaaaagtggcctcggaaagcttccggtggtggtgttcccaaacgcaaggggaataat
ttcggcggccgaaaggccagtggttcctcttcaacgtcacgatcaactgctggcagcagt
tcgaaacgagatgggaaaatcgtcaagaagagtggtgggggtatcggtctgatgccattg
tag
DBGET
integrated database retrieval system
