Pochonia chlamydosporia: VFPPC_00643
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Entry
VFPPC_00643 CDS
T09407
Name
(RefSeq) PWI domain mRNA processing protein
KO
K13171
serine/arginine repetitive matrix protein 1
Organism
pchm
Pochonia chlamydosporia
Pathway
pchm03013
Nucleocytoplasmic transport
pchm03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pchm00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
VFPPC_00643
03015 mRNA surveillance pathway
VFPPC_00643
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pchm03019
]
VFPPC_00643
03041 Spliceosome [BR:
pchm03041
]
VFPPC_00643
Messenger RNA biogenesis [BR:
pchm03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
VFPPC_00643
Spliceosome [BR:
pchm03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR-related proteins
VFPPC_00643
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PWI
Motif
Other DBs
NCBI-GeneID:
28844615
NCBI-ProteinID:
XP_018148837
UniProt:
A0A179G4H4
LinkDB
All DBs
Position
1:<2568311..>2569780
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AA seq
405 aa
AA seq
DB search
MASKVDARLLKSTKFPAEFNQKVDMQKVNLQVMKKWIANKISDILGNEDDVVIELCFGLI
EGTRYPDIKSLQIQLTGFLDKDTAPFCKDLWKLLLSAQSSPQGVPKELLEAKKLELMQEK
RDADKAADDARRRRDDFDRRDRQVSDMKERDRRDRQNNRKDRSPKAAAHEINMVVTATGI
SRMSGRDAGGSKTVDAVDHIHPRQMNRHVRDRVIGVHQPVAMGRERLHAGEPRRQDIAEV
GSDQGRQEEMHTAPNTADVVPVLPVNPAPCHRVEARPHQSEGGGNQNHEADHHQGGGANH
HHLDQAVGPGLAVVTEALRQEGAIGVGTAMTAKSQTVTGGMQTGTGEEVAAAKNGIRVDD
EIAHLLLQPQDVGNQQTIRKMSGARHDQTRARHAGKTSFVCWPVR
NT seq
1218 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcaaaggtggacgcgcgacttttaaagtcgaccaaattccccgctgagttcaat
caaaaggtcgacatgcaaaaggtcaacctgcaagtcatgaagaagtggattgcgaacaaa
atttccgatatcctgggaaacgaagacgatgttgtcattgagctctgctttggtctcatc
gagggaacacgctatcccgacatcaagtctctccagattcaacttaccggttttctggac
aaagatacggcacctttttgcaaagacttatggaagctactgctgagcgctcaaagtagc
cctcagggtgtgcccaaggagcttctcgaggcgaaaaagctggaactgatgcaggagaag
agagacgccgataaagcagcggatgacgctcgcagacgtcgcgatgatttcgatcgcagg
gaccgccaagtttcagacatgaaggagagagaccgacgggacaggcagaacaatcgaaaa
gatcggagccccaaagccgcggctcacgagatcaatatggtcgtgaccgcgacaggtata
tcccgaatgagcggcagggacgcgggagggagcaagacagtcgacgccgtcgaccacatt
caccctcgccagatgaatcgtcacgttcgagatcgcgtgataggagtgcatcagccagta
gcaatgggtcgagaacgcctccacgccggagaacctcgccgccaagacatcgcggaggtc
ggaagcgatcaaggtcgccaagaggagatgcataccgccccaaacacggccgacgtcgtt
ccagttctacccgtgaatcccgctccgtgtcatcgggtcgaagctcgcccgcaccaaagc
gaaggaggggggaatcagaatcacgaagcagatcaccaccaaggcggaggcgcaaatcac
catcatctggatcaagcagtcggtcccggtctcgcagtcgtgacagaagctctccggcaa
gaaggcgccataggcgtaggcacagcaatgacagcgaagagtcagacggtcaccggaggg
atgcagacagggaccggggaagaagtggccgcggcaaagaacgggatacgggtcgacgac
gaaatagctcatctgcttcttcaacctcaagacgtgggaaaccagcagacgattcggaaa
atgagcggcgctcgtcatgatcagactcgagcgaggcatgcgggaaagacatcattcgtc
tgttggccggtaaggtag
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