Pochonia chlamydosporia: VFPPC_00869
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Entry
VFPPC_00869 CDS
T09407
Name
(RefSeq) CC1-like family splicing factor
KO
K13091
RNA-binding protein 23/39
Organism
pchm
Pochonia chlamydosporia
Brite
KEGG Orthology (KO) [BR:
pchm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pchm03041
]
VFPPC_00869
Spliceosome [BR:
pchm03041
]
Common components
Common spliceosomal components
General mRNP proteins
VFPPC_00869
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RBM39linker
RRM_occluded
RRM_PARP14_3
RRM_3
RRM_7
PHM7_cyt
RRM_5
Motif
Other DBs
NCBI-GeneID:
28844799
NCBI-ProteinID:
XP_018149145
UniProt:
A0A179G5G5
LinkDB
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Position
1:3393046..3394933
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AA seq
566 aa
AA seq
DB search
MSGLDVEALLEATAQSAAQPNSNTQIDDSSRSDRNGRAQNGSEREGSKSRDDSRDRGRDA
DNDRRRRDRRDSPTRHRKGTPGETTPRSDTGSHRSRRRSESRDRDRYNSRRHRDGDYYRG
RRGRSRSRSRSPRRRYRPRDDRDRRDRRERSDRRDQGRGRDQSPGKRSRSPKLNEDERDS
RTVFVQQLAARLRSDKLKRFFEENAGPVNEAQIVKDRISGRSKGVGYVEFKDEETVQKAL
QLTGKPLAGIPIIVKLTEAEKNRQARNTEASSGHPNSIPFHRLYVGNIHFNVTEQDLQAV
FEPFGELEYVQLQKDDNGRSRGYGFVQFRDATQAREALEKMNGFDLAGRPIRVGLGNDKF
TPESTANLMHRFSGQNNFQGSAFSGAGGRGGQSSTFDRAGGRDSDKAGGASALDDTDVAG
VNFNNYSRDALMRKLARTDEIPNGREDQAVVKPKTEAKPLPVNVNMASRCVVLHNMFDPE
EEEGDDWVKELEDDIRSEAERQYGHVVHIAVDPNSKGDVYLKFDKVQGGENAIKGLNGRY
FGGRMINASPVVDAVYSSLFSRTRAI
NT seq
1701 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggcttggatgtcgaggccctcttggaggccacagctcaaagtgcagcacagcca
aattccaatactcagatcgatgactcttccagaagcgaccggaatggtcgcgctcagaac
ggatctgagcgcgaaggctccaagagccgcgatgatagccgcgatcgtggcagagacgct
gacaatgatcgccgtcgacgtgatcgtcgagattctcctacaagacatcgtaagggcact
cctggcgaaaccaccccacggagtgatactggaagccaccgcagtagacgccgcagcgaa
agccgggatagagaccggtacaactcacgccgacacagggacggtgattactatcgtgga
cgacgcgggcgatcccgctcccgctcaagatcccctcgtcggcgttatcgccctcgagat
gaccgagatcgtagggaccgccgcgagcgctctgaccgccgagaccagggtcgaggacga
gatcaatccccgggcaaacggtctcgttcacccaagttgaatgaagacgagcgggacagc
cgaaccgttttcgttcagcagcttgctgctcgtttgcgaagtgacaagctaaaacgattc
ttcgaagagaatgccggtccagtaaacgaggctcagattgtcaaggacagaatcagtgga
cgatccaagggagttggttacgttgaattcaaggacgaagaaacggttcaaaaggcactt
cagctcactggaaagccattggcaggtattcctattattgtcaagctcacagaagctgag
aagaatcgacaagctcgcaacaccgaagcgtccagtggacacccgaactctattccgttt
catcgcctatacgttggtaatattcacttcaatgtcacggaacaggacctgcaagccgtc
tttgaaccattcggtgaactcgaatatgtccagcttcagaaggacgacaatggtcgcagc
cgtggatacgggtttgttcaattccgtgatgcaacccaggctcgcgaggctttggaaaag
atgaacggctttgaccttgcaggccgacctatccgagtcggtctgggcaacgataagttt
acccctgagagcacggccaacttgatgcataggttttcaggacagaacaacttccagggc
tctgcgttctcaggagcaggaggccgcggtggccagtcttccacgtttgacagagccggc
ggccgagacagcgacaaagccggcggcgccagcgccctcgacgacaccgatgtcgcagga
gtaaactttaataattacagtcgcgatgcattgatgagaaaacttgccagaaccgacgag
atacctaatggaagagaagaccaggccgttgtgaaacccaagactgaagcgaagccactt
cctgtcaacgtcaacatggctagtcgctgtgtagttctgcacaacatgttcgaccctgaa
gaggaagaaggtgatgattgggtcaaagaactcgaagatgacatccgatcagaagccgag
aggcagtatggacatgtcgttcacattgctgtcgatcctaactccaagggtgacgtttat
ctcaagttcgacaaagtccaaggcggtgaaaatgcaatcaaaggcctaaacgggagatat
ttcggcggaaggatgattaatgcatctccggttgtcgatgctgtctatagcagtctcttc
tcccgcaccagagccatttaa
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