Pochonia chlamydosporia: VFPPC_01048
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Entry
VFPPC_01048 CDS
T09407
Name
(RefSeq) transcription factor TFIIH subunit Tfb4
KO
K03143
transcription initiation factor TFIIH subunit 3
Organism
pchm
Pochonia chlamydosporia
Pathway
pchm03022
Basal transcription factors
pchm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pchm00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
VFPPC_01048
09124 Replication and repair
03420 Nucleotide excision repair
VFPPC_01048
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pchm03021
]
VFPPC_01048
03400 DNA repair and recombination proteins [BR:
pchm03400
]
VFPPC_01048
Transcription machinery [BR:
pchm03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
VFPPC_01048
DNA repair and recombination proteins [BR:
pchm03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
VFPPC_01048
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb4
Rogdi_lz
MGAT2
DUF4776
Motif
Other DBs
NCBI-GeneID:
28844940
NCBI-ProteinID:
XP_018149386
UniProt:
A0A179G7B7
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All DBs
Position
1:complement(4092229..4093305)
Genome browser
AA seq
358 aa
AA seq
DB search
MDAVDVSEHYEVTTAEETPSLLSIVIDTNPRAWAALNDSLPLAKAIANILVFVNAHLAFS
NVNQVAVIAAHVNRAAWLYPTPPQISRKDTSGDVQMNDAPSDVSRNSANKYPQFAQIETA
VLTSMQKLINETTEQDLEATTTQLSGALTLALCHINKASQALKGPSGNLAEVTQPSANVA
PPMKGRILVISVSDSEPSQYIPTMNAVFAAAHAQVAIDTLSLSGDSTFLQQACFNTNGTF
LVAANPKGLLTYLMFGLIADTEARQSLITPTHDTVDFRAACFCHGKVVDTGFVCSICLSI
FCELPENAECLTCGTKLALGNYGAKPAVVPRKKKKKKRIGNGGSGREETGSATATPLR
NT seq
1077 nt
NT seq
+upstream
nt +downstream
nt
atggacgccgtcgacgtctcagagcactacgaggtcaccaccgccgaagaaacaccctcc
ctcctctccatcgtcatcgacaccaatccccgtgcctgggccgcactaaacgactccctc
cccctggcaaaagccatcgccaacatcctcgtcttcgtcaatgcccacctggccttcagc
aatgtcaaccaagtcgccgttatagccgcccacgtgaatcgcgcagcatggctctatccc
actcctccgcaaatatcacgcaaggacacctcgggcgatgtgcaaatgaacgacgcaccc
agtgacgtatcgcgaaactcggccaacaagtacccgcaatttgcgcagatcgaaaccgcc
gtcctaacttccatgcagaagctcatcaacgaaaccacagagcaggacctcgaggcaacc
accacacaattgtccggtgccctaacactggcactatgccacatcaacaaagcttcccag
gcattgaagggcccatccggaaacttggcagaggtaacccagccaagcgccaacgtcgca
ccccccatgaaaggtcgcatcctcgtcatttccgtatccgactcagaaccatcccaatac
atccctaccatgaacgctgtatttgccgccgcccacgcccaagtagccatcgacacgctc
tccctctcaggcgactccaccttcctccaacaagcatgcttcaacaccaacggcaccttt
ctcgtggccgcaaaccccaagggtctcctcacctacctcatgtttggtctcatagcagac
acggaagctcgccagtccctaatcacgccgacgcacgacactgtagactttcgcgccgcg
tgcttctgccacggaaaggtggtcgacaccgggtttgtatgctccatttgtttgagtata
ttttgtgaactgccagaaaatgcggaatgcttgacgtgtgggacgaaactggcactgggt
aactacggcgccaagccagcggttgtgcctcggaaaaagaaaaagaagaagaggattggg
aatgggggcagtggacgtgaagagactggcagtgcgactgctactcctttacggtaa
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