Pochonia chlamydosporia: VFPPC_01398 Help Entry VFPPC_01398       CDS       T09407                                  Name (RefSeq) CCR4-NOT core subunit CDC39   KO K12604   CCR4-NOT transcription complex subunit 1 Organism pchm  Pochonia chlamydosporia Pathway pchm03018   RNA degradation Brite KEGG Orthology (KO) [BR:pchm00001]  09120 Genetic Information Processing   09123 Folding, sorting and degradation    03018 RNA degradation     VFPPC_01398  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:pchm03019]     VFPPC_01398 Messenger RNA biogenesis [BR:pchm03019]  Eukaryotic type   mRNA surveillance and transport factors    mRNA cycle factors     P-body specific factors      VFPPC_01398   mRNA degradation factors    3'-5' decay     Ccr4-NOT complex      VFPPC_01398 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Not1 CNOT1_CAF1_bind DUF3819 CNOT1_TTP_bind CNOT1_HEAT ARM_Cnot1 HTH_Cmi2_C Motif Other DBs NCBI-GeneID:  28845228 NCBI-ProteinID:  XP_018149840 UniProt:  A0A179G7I4 LinkDB All DBs Position 1:5344883..5351611 Genome browser AA seq 2187 aa AA seqDB search MVPPQRTGSFSPNPAQNLQTASNHSPHPSHAGVLSAGASPSTSSPTGPNSVTKIVVAQVY LLLSTIKEEKEDTAKWDSKGAQLQKLINENGMEVFSKYFTRLVAGNVSQIFPSLNRPVTG SGNYHILAAEMRKIAHEPDQASKIAESVESGTEDIFRDFDLSTFMEHFKLDALEKSLLAL AFKTGSRSDLKTKADAILSTNFPTFLDIISRPEIEAHSDLSPAFVALIVDRFLQYHPPSF NASSRRDLQNYISKRYHSVEQAPPSEVLAALDIGRVLADRPANALSRFIQKTGPEFTRDE ESCLVYLQNRPNNVQLNSEQVSAALTYTTLSQSPEHDPSVLVSALQRVTSKSFDWNEVVL FFDQPSARISSSQFLRLYMALLPIARDSKYNFDIQRLWGGSWSEPEAQLSFVSAYASLGP DQLDATTIPGLRKSITIEDYANSPSNVQERALVAVKHPLVSVAALSAIFNVALNSVHASQ SVEAKRLFQEVVVPNLDIFLVSALEVPRDTWAPMAVDTLNSLFENFLHKRSPEYDFVLDS LWRKDKDWVIQRLIDAHAVKPVDLPLIFEHAVRHHWLDVLVYLPNGFGIDLAAFAHAENF LDLNNWASFNAERSVEMSRTLVQFLLIKADLEIRYQRPGDGQLQAKPSTSLQVRTVSALL QILEDFLPKAPVQDLIMVQRLCITAYPRLINYGEGYDDIIDASGKDGNSLPTTANAKMED HYKKMYGGEVEVKTIVDILDRYKHSRDPLDQDIFACMIHGLFDEYNHYQDYPLEALATTA VLFGGIISHKLISDLPLKIGLGMILEAVRDHVPDKPMYKFGLQALIQLFVRFREWPGFCR QLLQIPGLQGTDAFKRAEESVQDHEEELSRSRNGTGTPLAMAFNTDTFTNGGSEDQPGVD TQAPAFTAVNIDPIPRDAEFEEPGEEEQGKIQFVLNNITEGTIQSMRNELREMLERKHQQ WFASHLVEERAKMQPNYHHVYLELVTLLQDKALWDEVLRETYVSVSRMLNSEATMQNSTD RTHLKNLGGWLGLLTLARDRPIRHRNIAFKQLLIEAHDTKRLIIVIPFVCKVLTQGATSA VFRPPNPWLMDIIHLLIELYHHAELKLNLKFEIEVLCKGLNLDHKSIEPSGEILNRPALE ETAELLAPEQLEAFDNLSLNGLGSAVGGTISTQAVAATIPDLGPLIIIPPTNEMVISTTR LHEIVRNAMTRALQDIIQPVVDRSVTIAAISTAQMVRKDFVAEPDENRMRASAISMVKAT AGGLALVTSKEPLRANLTNHMRNFANDLPSGLPEGTIIMCVNSNLDLALSIIEKQAEERA VPEIEDMIEPDLEARRRHRMQHPNEPFFAATVNRWAMTIPNPFKLSPTSNGLNPEQMAIY EDFARQSRTTPATAPSHAASASDATRSLANEVLQEPYPNIPNIPTPAETPSIQHLGTQMQ PYAPVQSAAANSIPSGRNAGFHQMDVRGLADKVNRLLQELLRVAGEAREDHFLDLPRPHI VLDVVDALVQLIIKTSQNSEEFAIYAAEQISALIFQQVEDNLTLESLVHVLETLRKISGH ALNSRVRALFSQQPGSNFLNLPLLAALIRTDLLDWRSIDLAMSKAIEARKDGSLEFLEHM LDLALLNNRPIALYADFVRTLETAWAWISEEPNSVAGQRLKTKLMGSGLPQPSRGPTDAD SQGAGFRQDQMEYVFEEWVHLWNNQNALDKSTTVFIQQLQAKQVIRDKEDFFLFVRTAID LSVDRFEHILHAGVISDAYVMVDALAKLISMFISMHEDSSTSRASFLDSVLVLITLVINH HHVKRGEQLNQRVFFRLLSMLLHEVHNSSESLSDEEQRNMMLKFAARFYDLGPLRLPGFT FGWLSLIQHRVFLPVVLQMPDNAGWRLYAKLLVQLLDCLSEQLKAFNIMTVSKEVYRATL KLLVVLQHDFPDFVAGNHVRLCASIPPHCTQLLNAVLSANPQQGYTKLADGKEDIKTYPG LIEEARAMLQEGGLLDLVDQTLQNGPSEDVVAQLAHAMTQSKPRETAYGHIAVAANPHVI GSIVIYIGNQAAERLSQSSASITVTGSEPEVSTLSLLIHELAPEARYYLIASMVNQLRFP NSLTDFFSQVLLYIFGKDLNDPEESDIRQEITRVFLERLVGYWPQPWGLMRTVLELVKND KYMFFDLPFIKSTPEVAERFAAVLQRA NT seq 6564 nt NT seq  +upstreamnt  +downstreamnt atggtccctccgcaaagaacgggatcattttcaccaaacccggcccagaaccttcagact gcaagtaatcattccccccatccgtcgcacgctggtgtccttagtgctggcgcaagcccc agcaccagcagtccgacagggcccaactccgtgacgaagatcgttgtcgcacaagtctac cttttacttagtaccattaaggaagaaaaggaggataccgccaagtgggattcaaaggga gctcagctacaaaagctcatcaatgagaacggtatggaggttttttcaaaatatttcacc cggttagttgccggcaatgtctcccagatattccccagcctcaaccgaccggtgacgggt tccggcaattaccacatcctcgcggctgaaatgcggaaaatcgcacacgagccagaccag gccagcaaaatagccgagtctgtcgagagtggaacagaggacatattccgcgatttcgat ctctcgacattcatggagcatttcaaacttgacgctctagagaagtcgctcctggccctg gcattcaagacgggatcgcggtcagacctgaaaaccaaagccgatgctattttgtcgaca aattttcctacatttctggacattatttcgcgtcctgaaattgaggcacactcggacttg tctccagcctttgtcgctctgatcgtcgaccggtttttacagtaccacccccccagcttc aacgcctcctcccgacgtgacttacaaaactacatttccaagagataccatagcgtggaa caggctcctccctccgaagttttggcagcacttgacatcggtcgagttttggctgaccga ccggcgaatgctctctctagatttatccagaagacgggccccgaattcactcgggatgag gagtcttgtctcgtatatttgcaaaatcggcccaacaacgtgcaactcaactctgaacag gtttccgctgctctcacatatacgaccctcagccaatcccctgaacatgatccatccgtc ctcgtctccgcactgcagcgtgtcacttccaaatccttcgattggaatgaggtggttttg ttcttcgaccaaccatccgcacggatttcgtcctcccaattcctgcggctttatatggct ttgctaccgatagcgagagactcgaaatacaacttcgacatccagaggctctggggtggt tcttggagtgaaccagaggcacagctgtccttcgttagcgcgtacgcatccttgggtccc gatcagttggatgcgactaccattcctggcttgaggaagagtatcacgatcgaagactat gccaactctccatcaaatgttcaggagcgtgcgttggtagcggtcaaacatcctttggtg tctgtcgctgccctttccgccatattcaatgttgcactgaattctgtccacgcgtcacaa agcgttgaagccaagaggctgttccaggaggtcgttgttcctaacttggatatttttctt gtatccgcactggaggttccacgagatacctgggctcccatggccgtggatacgttaaac tctctattcgaaaacttcttgcacaaacggtctcccgagtatgatttcgttttggacagc ttgtggaggaaagacaaggattgggtgattcaacgactaattgacgctcatgcggtcaaa cccgtggaccttcccctcatttttgaacacgcagttcgacatcattggctagatgttctt gtctaccttccaaacggcttcggtattgatctcgctgctttcgcccatgcagagaacttc ctggacttgaataattgggccagcttcaacgcagaaagaagtgtggaaatgtcccggaca ctggtacagtttcttcttatcaaggctgatttagagattcggtaccagcgtcctggcgat gggcaactgcaagcaaagccaagtaccagtcttcaagtccgtacggtatcggctctgttg caaattctggaggactttttacccaaggcacctgtgcaagaccttatcatggtccagcgc ctctgcatcacggcatatcctcgattgatcaattacggtgaaggatatgatgacattatt gacgcaagtggaaaagacggtaacagtttaccgacaaccgcgaatgccaaaatggaagac cattacaagaagatgtatggcggtgaggtcgaagtgaagacgattgtggacattttggat cggtacaagcattctcgcgaccccttggatcaggatatttttgcttgtatgatccatggc ctgttcgatgaatataaccactaccaagattatcccttggaggccttggctacgacggca gttctttttggcggcattatctcacacaagttaatatcagatctgccattgaagattgga ctcggtatgatattggaagctgttagagaccacgttcctgataagccgatgtacaagttc ggcctccaagccctgattcagctatttgtacgtttccgcgagtggccaggattttgccga caactgctgcaaataccgggtctgcagggtaccgatgccttcaagagggctgaggagagt gtacaagatcacgaagaggaactttcccgctctcgtaacggcaccggtacccccctagcg atggcgttcaacaccgatactttcaccaatggcggatccgaagaccaacccggtgtcgac acgcaagcacccgcatttacggccgtcaatatcgatccgattccccgagatgccgagttt gaagagcccggtgaggaagagcagggcaagattcaattcgtcttgaacaacattaccgaa ggaactattcagtctatgcggaacgaattgagagaaatgctggaacgcaagcatcagcaa tggtttgcaagccaccttgtggaagaacgtgctaaaatgcagccgaattaccaccacgtt tatctcgagcttgtcactcttttacaggacaaggcgctctgggacgaggtcctgcgggaa acatatgttagcgtctcgcgaatgctgaattccgaggcaacgatgcaaaattcgaccgac cgaacgcacctcaaaaaccttggtggttggctaggcttgttgactcttgctagagatcgt ccaatccgtcataggaatattgcattcaagcagctgctcatcgaagctcacgacaccaag agactcatcatcgtcatccctttcgtgtgcaaagttttgacccagggtgccacgtccgct gtcttccgaccccctaatccctggctcatggatatcattcacctgttgattgaattgtat caccacgcagagttgaagctgaacctcaaattcgagatcgaagtcctctgcaaagggttg aatcttgaccacaagagcattgaaccatctggcgagattctgaaccgacctgctttggag gagacagcggaacttctagctccagagcagttggaggccttcgacaatttgtctttgaac ggactcggatctgctgttggcggcaccatctcgacacaggccgtggccgctactattccg gaccttggacccctgatcataatacctcctaccaacgagatggttatcagcacaactcgc ctgcacgaaattgtgagaaatgccatgacgcgtgcactacaagatatcatccaacctgtt gtggataggtctgtgaccattgcagccatttcgactgcacaaatggtccggaaggacttt gtggctgagcctgatgagaatcgcatgcgtgcgtctgcgataagcatggtaaaggcaacc gccggcggattagctttggtgacttccaaagaacccctaagagccaacctgaccaaccac atgcgaaacttcgcgaacgacttgccatccgggcttcctgaaggcaccatcatcatgtgt gtgaactccaatttggaccttgcacttagcattatcgagaaacaagcagaggagcgagct gttccggaaattgaggacatgattgagccagatctcgaggccagaagacgccatcgcatg caacaccccaatgaacccttctttgcagctactgtgaaccgttgggccatgacgattcca aacccatttaagctgtctcccacctccaatggtctcaacccggaacaaatggctatttac gaagacttcgccaggcagtctcgaaccacaccagccacggcaccatcacacgcagcgtcg gcttcagatgccacacgatctctggcgaacgaagtgcttcaagagccgtaccccaacatt ccgaacattcccacccctgctgaaactccttcaatccagcatctgggcacacaaatgcag ccctacgcaccggtgcagagcgctgctgccaattctatccccagtgggcgcaatgctggc ttccatcaaatggacgtcagaggcctggccgataaagtaaacagactactacaagaactg ttgcgtgtcgctggtgaggctcgggaggatcactttctagatctgcctagaccacacatt gtcctagatgtagtggatgcccttgttcagttgattatcaagacctcacagaactcagaa gagtttgctatctatgcggctgagcagattagcgctcttattttccaacaagttgaggat aacttgaccctggaaagcttggtacatgtgctggaaactcttcggaaaatatctggccac gctctgaacagccgtgttcgcgctcttttcagccagcaacctgggtcaaatttcttgaac ctgcctctacttgcggccctcatccggaccgacttgcttgactggagaagtattgacctg gcaatgtccaaggccattgaagcccgtaaggatggatcgcttgaattccttgaacacatg cttgacctcgcgttattgaacaatcgcccaatcgcactgtacgcagactttgttcgaact ctggagaccgcttgggcgtggatctcggaagaacccaacagtgttgctgggcagagactg aagacgaaactgatgggttcagggctgcctcaaccttcccgcggaccgacagatgcagac agccagggagctggtttccggcaagaccagatggaatacgtctttgaggaatgggtccat ctttggaacaaccagaacgctcttgacaaatccaccaccgtgttcattcagcagctgcaa gcgaagcaagtcatacgggataaagaagactttttcctctttgtacgaaccgcaatcgat ttgtccgttgatcgattcgagcacattctccacgccggtgttataagcgatgcttatgtc atggttgatgccttggctaaacttatcagcatgtttatcagcatgcatgaggactcatcc acgtcccgtgcttcattcctcgactctgttttggtgttgattaccctggtaatcaatcat catcatgtcaagagaggcgagcaattgaaccagagagtcttcttccgtttgctgtcaatg ttgctgcatgaagtacacaacagctctgaaagtctttcagacgaagagcagcgcaatatg atgctgaaatttgcagccagattctacgatttgggtccgctgcggctccctggtttcact tttggatggctctcgctcattcaacatcgggttttcctccccgtcgtgctgcaaatgccc gacaatgccggatggagactttacgccaaacttttggttcagcttctcgactgcctcagt gagcagctcaaggcttttaacattatgacagtgtccaaagaggtctacagggcgactctc aaactacttgttgtcctgcagcacgattttccggacttcgtagctggcaatcatgtgaga ctttgcgctagcattcctccccattgcacccagttactcaacgcagtgctgtcagcaaat cctcagcagggatataccaaattagcggacggcaaggaggatatcaagacctacccgggg ctgatagaggaagccagggcaatgctgcaggaaggtggcctgttggacttggtggaccaa acacttcagaacggcccttcagaggacgttgtcgcacagcttgctcatgccatgacgcag agcaagccgcgggagactgcctacggacacattgctgttgcagccaacccacacgtcatt ggctccattgttatttacattggcaaccaggctgctgaacggctgtcgcaaagctcggca tcaatcacggtgactggcagcgaaccagaggtgtcgactttgtcgctccttattcatgaa ctggcaccagaggctagatattacttgattgccagcatggtgaaccaactacgattcccg aacagcttgacagacttctttagccaggtcctcctctacatttttggaaaggatctaaat gaccctgaagagtctgatattcgccaagaaatcactcgagtgtttctggaacgcctggtc gggtactggcctcagccgtggggtctcatgcggaccgtcttggagcttgtgaagaacgac aagtacatgttttttgaccttccgttcatcaaatcaaccccagaggttgctgagaggttc gctgccgttcttcaaagagcttaa

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