Pochonia chlamydosporia: VFPPC_02030
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Entry
VFPPC_02030 CDS
T09407
Name
(RefSeq) nonsense-mediated mRNA decay protein
KO
K14328
regulator of nonsense transcripts 3
Organism
pchm
Pochonia chlamydosporia
Pathway
pchm03013
Nucleocytoplasmic transport
pchm03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pchm00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
VFPPC_02030
03015 mRNA surveillance pathway
VFPPC_02030
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pchm03019
]
VFPPC_02030
Messenger RNA biogenesis [BR:
pchm03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
VFPPC_02030
mRNA cycle factors
P-body specific factors
VFPPC_02030
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_1
GvpH
Motif
Other DBs
NCBI-GeneID:
28845749
NCBI-ProteinID:
XP_018138815
UniProt:
A0A179F6D0
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All DBs
Position
1:complement(<7694093..>7696269)
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AA seq
688 aa
AA seq
DB search
MSTQPPQVLSRKANGTSSGTASQISDPAKVRQRVRVSQARRDQSPAPHQSSLTYVNIGQG
KGTDTSGNTAKSSKGRGASDRRSGATKGTNDGEVATRSPRSKSQNEGEKVVVRRLPPGMT
RDEFVAILGPEWEVSKGKVDWFSYVTGKISTDPSKPSRPGRAYLHLVRKDDIMPLSDAVR
TATWEDAKSTFTNPSLIGPPTLEFSIYKKVPSTKKRTDARQGTIDQDPEFMAFLEGLANP
APMRDSIDVEEAAESAKADTKVTTTPLVEFLKEKKANKGKDGKNSKSGKGKGGSKDDESS
GRKKGKESRGERQEKAPKETVKILTKKAATEQAAEGAKKAANQIATANAASNAAAAGSSD
APKSRRAGIAAAARILQRDLGLSPGSAHRRARHDAAKAEADAKAATSATKESNGNSTDTA
TAATASTQPTPADAAAQTPKSRPESPVTSKPQTGRRNRGGKGAVDKGKAAGNETPAAQPT
AANPPVILKKKTDAETNQKAAEPPATAPAVNANASGKQASKERGNNKQASQKKSASVSAN
AIRAFVKHVNASQGVNDASLREALGSFGNITLVEIDKRKGFAYVDFSEHDALVKAVSASP
IQVGQANVQVLERKDKKPAASAPAAAGKESTTPNSEKEKDKDKEKEKPSGGRGRRGRGGG
KAASTATNGQATAAAAPASGAAATSTGG
NT seq
2067 nt
NT seq
+upstream
nt +downstream
nt
atgtccacacagccgccacaagtcctttcgcgtaaggcaaacggaacatctagcggcaca
gccagccaaatatcagacccagccaaggtgagacagcgagtgagggtatcacaggcccgt
cgcgaccagtctccggcaccacatcagagctccctgacttacgtgaacattggacagggc
aagggaactgatacctccggcaacacggcaaagtcttctaaggggcgaggagccagtgac
agacgatcaggggccactaaaggtaccaatgatggagaagtagcaacaagatctccacga
tccaaatcccagaatgaaggagagaaggtagttgttcggcgattgcctccgggcatgaca
agggatgaatttgttgctatccttggacccgagtgggaagtctccaaaggcaaggtggac
tggtttagctatgtcactggaaagatttccaccgatccctcaaagccgtcacgccccggt
cgggcataccttcacttggtgcgaaaagatgacatcatgcccctcagtgatgctgtaagg
actgctacatgggaggatgcaaaatccacattcactaatccatcattaattggaccgccc
acgttggaattctcaatttacaaaaaggttcccagtactaagaaacggacggacgcgcgg
caaggcaccattgaccaggacccggaattcatggcgttcctcgaaggcctcgctaatccc
gcgccaatgagggacagtatcgatgttgaagaggctgccgagtctgccaaagccgacacg
aaagtcaccaccactccgctggtcgaattcttgaaggagaagaaagcgaacaaggggaag
gatggaaagaactccaaatctggaaaagggaagggtggatccaaggacgacgagtcatcc
ggtaggaagaagggcaaggaatcacgaggcgaaaggcaggagaaagcacccaaggaaacg
gtgaagattctgaccaagaaggctgcaacggagcaagctgccgaaggggcaaagaaagct
gcgaatcagattgcgacggcgaacgctgcttctaacgctgcagctgctgggtcctctgac
gccccaaagagccgacgagctggaattgctgcggctgctagaatcttgcagcgagacctt
ggtcttagcccaggaagcgcacatcggcgggcacgtcacgatgctgccaaggctgaagcg
gatgcgaaggcggcaacctctgcaactaaggagagcaacggcaattccacggacactgct
accgccgcaacagcgtcaacgcagccgacaccggccgatgccgcagcacaaactccgaag
agtcgtccagaaagtccagttacttcaaaaccacaaaccgggcggagaaaccgtggtggg
aagggtgcagtcgataagggcaaggcagcaggtaacgagactccagctgcacaaccgacg
gctgccaaccctccagttattctgaagaagaagaccgatgccgaaaccaatcaaaaggct
gccgaaccgccagccacggcaccagcggtgaatgccaacgctagcggcaaacaagcgagc
aaagagagaggtaacaacaagcaagcatcgcagaagaagtcggcctctgtctcagcaaat
gcaattcgcgcattcgttaagcacgtcaacgcctcgcaaggagtcaacgatgcgtcgctt
agggaggctctcggctcattcggaaatatcacactcgttgagatcgacaagcgtaaggga
tttgcttatgtcgacttttcagagcacgatgctctggtgaaggccgtctctgcaagccca
attcaagtcggccaggccaatgtacaggtgctggagcgaaaggacaaaaagcctgcggct
tctgcgccagcggcagcgggaaaagagagcactacaccaaacagcgaaaaggagaaggac
aaggacaaggaaaaagaaaagccatccggaggccgtggccgaagaggacggggcggtgga
aaagccgcttccaccgctaccaatggtcaggccactgcagcggcagctccggcttcaggt
gctgcagcaacgagcaccggagggtga
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