Pochonia chlamydosporia: VFPPC_02775
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Entry
VFPPC_02775 CDS
T09407
Name
(RefSeq) SNF2-family ATP dependent chromatin remodeling factor snf21
KO
K11786
ATP-dependent helicase STH1/SNF2 [EC:5.6.2.-]
Organism
pchm
Pochonia chlamydosporia
Brite
KEGG Orthology (KO) [BR:
pchm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pchm03021
]
VFPPC_02775
03036 Chromosome and associated proteins [BR:
pchm03036
]
VFPPC_02775
Transcription machinery [BR:
pchm03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SWI/SNF complex
VFPPC_02775
RSC complex
VFPPC_02775
Chromosome and associated proteins [BR:
pchm03036
]
Eukaryotic type
Chromatin remodeling factors
RSC complex
VFPPC_02775
SWI/SNF complex
VFPPC_02775
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
HSA
Bromodomain
SnAC
QLQ
ResIII
DEAD
HDA2-3
RBR
Motif
Other DBs
NCBI-GeneID:
28846362
NCBI-ProteinID:
XP_018146816
UniProt:
A0A179FZ87
LinkDB
All DBs
Position
2:2159548..2163959
Genome browser
AA seq
1422 aa
AA seq
DB search
MASVQAPPAVQHPGAPMPAGATKQQAEEVFKKLKQMKEQGVPPTDPEYIKASHFLMNFQQ
QHNMRRNQQQFMQQQQQQQMQNATNGVQQPGRSQQGTPQSTQATAGPQGAAATPTQTSAA
APNAPPAPGSGSSQFSQQQLALLRQQIHAFKLLGKNAGVSVQLQQAIFNQRQRRQAAAVE
STPSSAKTAQPSQDTEKAPSAAPEVATEEESPMPKAHTYKSVKSPYGTSMIRPSIKYLDH
TQRKNRWFIPGVFPTGIDFDHLRYEREVVIFNRMSQRYAELKNLPANLAHWDSSKESLEA
DDTLKRKAIIEMKSLALYAKQRALREKIGRQMVHYDNLAMTTNRSHYRRMKKQNVREARI
TEKLEKQQRDARENREKKKHSDFLRAICHHRAEIQESANSQKTKSHKLSRLMYAQHFNIE
KEEQKRIERTAKQRLQALKANDEEAYLKLLDQAKDTRITHLLKQTDGFLHQLASSVKAQQ
RHAAEAYGDDTEPFVEEESEDDDEESGKKIDYYAVAHRIREEVTEQASILVGGTLKEYQI
KGLQWMISLYNNNLNGILADEMGLGKTIQTISLITYLIERKMQSGPYLVIVPLSTLTNWN
LEFEKWAPSISRIVYKGPPNARKLQQEKIRQGRFQVLLTTYEYIIKDRPILSKIKWFHMI
IDEGHRMKNSNSKLSATIQQYYTTRFRLILTGTPLQNNLAELWAMLNFVLPNIFKSVKTF
DEWFNTPFANTGGQDKMELTEEEQILVIRRLHKVLRPFLLRRLKKDVEKDLPDKTEKVIK
CKFSALQSKLYKQMVTHNKLVVSDGKGGKSNARGLSNMIMQLRKLCNHPFVFDEVENVMN
PMSISNDLLWRTAGKFELLDRILPKYQATGHRVLMFFQMTAIMDIMEDYLRYRKFEYLRL
DGTTKSDERSDLLREFNAPDSKYFMFLLSTRAGGLGLNLQTADTVIIYDSDWNPHQDLQA
QDRAHRIGQKNEVRILRLISSNSVEEKILERARFKLDMDGKVIQAGRFDNKSSETDRDAM
LRTLLESADMAESGEQDDMEDEELNMMLARSDDEITVFQKIDEERALDPTYGSVNGAKAK
PRLMGDDELPEIYLNEGSVVEEETEDLVLGRGARERTKVRYDDGLTEEQWLMAVDDDEDS
PEAAALRKQARKDKRETNRLKKMAIMNSIDNSPSASRASTEEIETPKKRGRKPGSKNEKR
KAEDGDEEPPAKKRRGPQGRPSKGGSVATDSRVNPQQREVLQKSLRGLYDALMNLEVDDI
EPPAEDDESDAGKRLIIGPFIKLPPKRDYADYYLIIQNPICMNHIQTRIKKEEYASLSDL
RKDFQLMIRNCQTYNEDGSILYQDAKTMEEFFNKKFQEELDAHTELQELEEGGSKAGSAA
PSGQGPSTPQTSSGTRIKIISSSARASEAANGTKSAAQSDDE
NT seq
4269 nt
NT seq
+upstream
nt +downstream
nt
atggcgtctgtgcaagctccgcctgcggtgcagcacccaggcgcgccgatgcctgccggc
gcaaccaagcagcaagccgaggaggtcttcaaaaaacttaagcagatgaaggaacaaggc
gtaccacctacggaccccgagtatatcaaggcttctcacttcttgatgaatttccaacag
caacacaacatgcgcagaaatcaacaacagtttatgcagcagcaacaacaacagcagatg
cagaacgctaccaatggcgtgcaacaacccggtcgatcacaacaaggcactcctcagtcg
acacaggctactgctggtcctcaaggagctgctgccactccaacacaaacatctgctgca
gctcctaatgcaccacctgctcctggctctggttcaagtcaattcagtcagcagcagctt
gctctcttgcggcagcagatccatgcgttcaagctacttggcaagaatgctggcgtttcg
gttcagctgcaacaggccatcttcaatcaaagacagcgtcgacaagctgctgccgtcgag
tctaccccgagctctgccaagacagcgcagcctagccaagatactgaaaaggccccttct
gcagcgcccgaggttgcaactgaagaagagtcccctatgccaaaggcccacacgtataag
tctgtaaaatcaccttacggcactagcatgattcgcccttcgatcaaatatctcgatcat
acccagcggaagaaccgatggttcattccaggcgtctttccgacaggtattgacttcgac
caccttcgatatgagcgagaagtcgtcatcttcaatcgaatgagtcagcggtatgccgaa
ctcaagaacttgccggccaacttggcccattgggactcttccaaggagtctttggaggcc
gatgacacactcaagcgaaaagccatcattgagatgaagagcctcgctctctatgctaag
caaagagcgttgcgagaaaaaattggtcgacaaatggtacactatgacaacctggccatg
actacgaaccgaagccattaccgccggatgaagaagcaaaacgttcgggaggcccgcatc
accgagaaactggagaagcaacagcgtgatgcccgcgaaaaccgcgaaaagaagaagcat
agcgatttcctgcgcgctatctgccaccaccgggctgaaatccaagagagtgccaactct
cagaagaccaagtcccacaagcttagccgtctcatgtatgctcagcactttaatattgag
aaggaagaacagaagcgaattgagagaacggccaagcagcgtctgcaggccctcaaagcc
aacgacgaagaggcatatctcaagctgctcgaccaggccaaagatactcgtatcacacac
ttgctcaagcagactgacggtttcttgcatcaattggcgtcgtcggttaaggcccagcaa
cgccatgctgccgaagcctatggcgatgatacggagccatttgtcgaagaagagagcgaa
gacgatgacgaggaaagcggcaagaagattgactactatgctgttgcccacagaatcaga
gaagaagtcactgagcaggccagcattttggttggtggtacattgaaagagtaccaaatc
aagggcctgcagtggatgatatctctgtacaacaataacctcaacggtatccttgctgat
gaaatgggtctcggcaaaaccattcaaaccatcagtttgatcacctatctgatcgagcgc
aagatgcaaagtgggccatatctcgtcattgttcctctcagtaccctcaccaattggaac
ctcgaattcgagaagtgggcaccatcgattagtcgaattgtgtacaagggtcctccaaac
gccagaaagctgcagcaggaaaagatccgtcaaggtcgtttccaggtgcttttgaccact
tacgaatacatcatcaaggatcgcccgatcctcagcaaaatcaagtggttccacatgatt
atcgacgagggtcaccgtatgaagaatagcaactccaagctgagtgctaccattcagcag
tactacaccacccgtttccgtctaatcctcactggtactcctctccagaacaatcttgca
gagttgtgggctatgctcaactttgtgttgccaaacatcttcaagtctgtcaagactttt
gacgaatggttcaatacaccgtttgccaacaccggtggtcaagataagatggaactcacc
gaagaagagcagattctcgtcattcgtcgtctacacaaggtcttgcgtccattcttgctc
agacgattgaagaaggatgtggaaaaggatctccccgacaagaccgaaaaggtcatcaag
tgcaagttttcagctctgcaatccaagttgtacaaacaaatggtcacacacaacaagctt
gtggtcagcgatggcaagggcggaaagagcaatgcccgtgggttgagcaacatgattatg
cagctccgcaaactgtgtaaccacccctttgttttcgacgaggttgagaatgtcatgaac
cctatgagcataagcaacgatctgctgtggaggacggccggtaaatttgagctgctggac
cgaatcttgcccaagtaccaggccacgggccatcgagtcctgatgttcttccaaatgaca
gccattatggacatcatggaggattatctacggtacagaaagtttgagtacttgcgtctc
gacggcacaacaaaatcggacgagcgatcggatctgctcagggagttcaatgcacccgat
tccaagtacttcatgttcttgctgtctacgcgtgccggtggtcttggtctcaatttgcag
acggccgatactgtcatcatctacgattctgattggaatcctcatcaagatcttcaagcc
caagatcgtgcgcatcgtattggtcagaagaacgaggtgcgaattcttcgattgattagt
tccaactcggttgaagaaaagatcttggaacgtgccaggttcaagttggacatggatggc
aaagtcattcaagccggtcgattcgataataagtcttctgaaactgaccgtgatgccatg
cttcgaactctgcttgagagcgctgatatggccgaaagcggcgaacaggatgacatggaa
gatgaggagctgaacatgatgctggcacgtagcgatgatgaaatcactgttttccagaag
attgatgaggagcgggctctcgaccccacgtatggcagcgtcaatggtgccaaggcgaaa
cccagactcatgggagacgatgagctgccagaaatctatctgaatgaaggcagcgttgtc
gaagaggagactgaggatcttgtgcttggacgcggtgcccgtgaacgcaccaaagtgcgg
tacgacgatggcttgacagaagaacaatggctgatggcggtggatgacgacgaggactcg
ccggaagcagccgcccttcgcaagcaagccagaaaggataaacgagagacgaacaggctt
aagaagatggcgattatgaactcgattgataactcgccctcggctagccgtgccagcaca
gaagaaatagaaacgcccaagaagcgcgggcgcaaaccaggcagcaagaatgagaaacgc
aaagccgaagacggtgacgaagaaccgcccgccaagaagcgacgtggtcctcaaggccgg
ccaagcaaaggcggctccgtggctactgattcccgggtcaatccacaacagcgtgaggtc
ttgcagaagagtttgcgcggcctttacgatgccctgatgaatctagaagtggacgatatc
gagccgcctgctgaggatgacgagtcggatgccggcaagcgtctcatcattggtcccttc
atcaagctaccacccaagcgcgactatgcagactactatctgatcatccagaatcccatt
tgcatgaaccatatccagactcgtatcaagaaggaagagtacgcgagcctcagtgacttg
cgaaaggatttccaactcatgatccgcaactgccagacctacaacgaggatggcagcatt
ctctatcaggatgccaagactatggaggagttcttcaacaagaagtttcaagaggaactg
gacgctcacaccgaattgcaagagctggaagaaggtggcagcaaggcaggatctgccgcg
ccgtctggccagggacccagcacaccgcagaccagcagcggcaccagaatcaagattatt
tccagcagtgcgcgcgcgagcgaggcagctaacggcaccaagtcggcggcccagagtgac
gacgagtaa
DBGET
integrated database retrieval system
