Pochonia chlamydosporia: VFPPC_02894
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Entry
VFPPC_02894 CDS
T09407
Name
(RefSeq) bimD protein
KO
K11267
sister chromatid cohesion protein PDS5
Organism
pchm
Pochonia chlamydosporia
Brite
KEGG Orthology (KO) [BR:
pchm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pchm03036
]
VFPPC_02894
03400 DNA repair and recombination proteins [BR:
pchm03400
]
VFPPC_02894
Chromosome and associated proteins [BR:
pchm03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Other sister chromatid cohesion factors
VFPPC_02894
DNA repair and recombination proteins [BR:
pchm03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Shu complex and associated proteins
VFPPC_02894
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PDS5
HEAT
HEAT_2
GAGA_bind
TPR_DNAAF5
Motif
Other DBs
NCBI-GeneID:
28846467
NCBI-ProteinID:
XP_018146955
UniProt:
A0A179FYV8
LinkDB
All DBs
Position
2:complement(<2558575..>2563170)
Genome browser
AA seq
1480 aa
AA seq
DB search
MPRRRTRAKEPDPVEDVEDEHMEEDVPEPEPEPASAAEPDAAVADGDDEDTEQRSLEFDE
ELSWRPAKPIPSATLLDRLERLSKELAEFDQGAVQLDSLKPVAASLAHRNLLQHKDRGVK
AYTACCLVDILRLFVPDAPFTDDQLKMMFTLFIKDILPALFDPTNPYNSQHKYVLMSLSD
VKSILLITEIHGADDLLLRLFNSTFDGVSTSSRASNEEQVAKDVEIGLTEMLMEVIDESP
GSIPATVIDAIISQFLRAAPPGGGRNKEQNGKQATLLHKTEPAAYVMAKNICNGCADKMS
RYVSQYFSDVILNASKFATKSNGFRQADESDEEDGHSGPSEADLKSLRQAHMLIRELWRA
APAILQNVVPQLDAELSADNVHLRLIATEAFGDMISGIGAAGPPAPPALDPAAYPPLRLM
DDAIGTPPVIDTETNVLTRPYSPQSFAQTHHATYRNFVGRKNDKTGSIRAAWVTAAGYIL
STSAGGIGLSREDEAELVKGLVDKLNDSEEKVRLAAVQAIELFSFRDVILKLGVTGGVEK
EGSIFASLADRCRDRKPAVRVDAMVLLGKLWAVGAGEIADGQEAVTACLSGVPSRIINAF
YANDPDLNVLLDRVLFECLVPLKYPLIKGKSGKSAAGSQGKGGVSAADQDRIRAERILLM
LKSLDASAQKAFFAMQARQPQFAKGVGIFIQQCEAYNGGVIDANEDKVKKTLTKTFEWLG
AFFPDPLKVRGDLQKFAKLNDRRSYQLVKYAIESESDFKTIRRAISELITKLQGTSAAVC
LDTLIPLLYRSSCLMFNRSHLATIMDYSKSDKDGFAAVAHSVLNDISQRNPDIFKAHAED
LRREIIEQAPTDKKSNDAGVVDILKAYSSYAKKYPKDINYDKSFTQTLMNYAQYATPARA
AKYAVNILLAKGDDKCKVTATNLLRNIMKGLDYGSPHFLARLASIAQLERLVPSVTADSE
KAIHELTLNQILRQVRTDAEEKDPSWVDDADMNEELQAKSLSLRILVNQALASETESDTE
ERVKSVFKLLRTFIVKEGEFCKVKDTPLHHKKRLRLLAGLLMLKLCTVKGYDDSLEPTTF
NKMAELVQDSELQVRRHFMEKLQNYLTRNKLKPRFHTILFLVAFEPASDLKNRVETWIRS
RARYYDDKKQRVMEALMVRLIPLLAHHPDFSPEIDDLVDFANYFLFYLNTVATEDNISLI
YRYTERVKQVQDGIKPEASDNLYVLSDLASTVIRKYQERRSWIFQAHPDKVGVPAGLYTA
LPSTEVAQRIAKKLYIPDEIDERLDDLLRAMDRKKKRKSIHEHGDPPAKRARTQIKTVIR
EKSKPKSSKSSKKSAKPKKVPKVKKQKESSSAAPSERRRSGRAHAVSDYKERDDADDEEE
MLEGVAEWDYGKVDSDAEESGSEESSEQSDDAESGNEDDEDDDDEDKEATTKRNGSRGAA
SSPKGKASVKASVLAKLDRTSRARGRGRGAKDDSEMDVDE
NT seq
4443 nt
NT seq
+upstream
nt +downstream
nt
atgccgcgacgccgcacaagggccaaggagcccgatcctgtcgaggacgtcgaagatgag
cacatggaagaggacgtcccagaacccgagccagaacctgcgtccgccgccgagccagac
gctgctgtggctgacggcgatgatgaagatacggaacagcgcagtcttgaattcgacgag
gagttgtcatggcggcctgcgaagcctatccccagtgcaactctgctggatcgtcttgag
aggttgtctaaggaactcgccgagtttgaccaaggagccgtacaattggattctctcaaa
ccagttgccgccagtctggcgcatcgcaaccttcttcagcacaaggaccgaggcgtaaag
gcctatactgcctgttgcctggtggatatcttgcgtctgtttgtgccagatgcgcccttc
acggatgatcaactcaagatgatgtttactctatttatcaaggatatcctaccagctctg
ttcgaccctacgaatccctataatagccagcacaaatatgtattaatgtccttgtctgat
gtcaaaagtattctgcttatcactgaaattcacggcgccgacgatttgttattgcgcctc
ttcaattcgacattcgatggcgtgtcgacaagctctagggcttctaatgaggagcaggtg
gccaaggacgttgaaattggccttaccgaaatgctcatggaggtaattgacgagtctccg
ggcagtatacctgccactgtcattgatgccatcattagccagtttctcagggccgcgcca
ccaggaggtggtcgcaacaaggaacagaacggcaaacaagcgaccctgttgcataaaacg
gaaccagcagcctacgtcatggccaagaacatctgcaatggatgcgccgacaagatgtca
cgttatgttagtcagtatttcagcgatgtcattctcaacgcttcaaaatttgcgaccaag
agcaatggcttccgtcaagcggatgagtccgatgaagaagatggtcattctggtccgtca
gaggccgatttgaagagcctccgacaggctcatatgctaatccgagagctgtggcgagcc
gctcccgctattttacaaaatgtcgttccccagctcgacgcggagttgtccgccgacaat
gtccacctgcgactgatagccaccgaagcctttggagacatgatctctggcattggagct
gcaggaccaccagcgcctcccgctctcgatcctgcggcctaccctcccctgcgcctaatg
gatgatgccatcggaactcctccagtaattgacaccgaaaccaacgtgttgacacggcca
tactcaccgcaatcgtttgctcaaactcatcacgccacttatcgcaacttcgtgggcaga
aagaatgacaagacggggtcaattcgtgccgcatgggtcaccgccgcaggttatattctg
tccacatccgcaggaggaatcggcttgagtagagaggacgaggccgagctggttaaaggt
ctcgtggacaagctcaacgacagcgaggaaaaggtgcgattggccgccgtccaagccatt
gagctgttcagtttccgcgacgtcattctgaaactcggcgtcacgggcggagtagagaag
gagggctccatctttgcaagcttggctgatcgctgccgcgacagaaagccggctgttcgc
gtcgatgccatggttctactcgggaagctgtgggccgtcggcgctggagagatagcagac
ggtcaggaggcagttactgcgtgtctgtctggcgttccgtctcgcatcattaacgcattt
tatgccaatgaccctgacctcaacgttttgctcgaccgggtcctatttgagtgtcttgtc
ccgctaaagtatcccctcatcaagggcaaaagtgggaagagtgccgcgggatctcaaggc
aaaggcggtgtcagcgctgcagaccaggatagaatacgagcagaaaggattcttctcatg
ctgaagtcgcttgatgcatctgctcaaaaggccttcttcgccatgcaagcgcgtcagcca
cagttcgcgaaaggcgttggcatcttcatccagcagtgcgaagcttacaacggaggcgtc
attgacgcgaatgaggacaaggtcaagaagaccttgaccaaaacttttgaatggttaggc
gcctttttcccagacccgttgaaggtccgaggggatttgcagaagtttgccaaactcaac
gaccgccgaagctatcagttggttaaatacgccattgaatccgagagcgacttcaagacc
attaggcgtgccattagcgagctcattaccaagcttcaaggcacgtctgcagctgtttgc
ctcgatacacttattcccttgttgtatcgatccagctgcctcatgttcaaccgaagccac
ctagccacaatcatggactattccaagagcgacaaggatggattcgctgccgttgcccat
tcggtactcaacgacatatcccagagaaacccggacattttcaaggctcatgctgaggac
ttgcggcgggaaataatagagcaagcgccaactgacaagaagagcaatgatgccggagtt
gttgatattctcaaggcctactcgtcgtatgcgaagaagtatcccaaggatatcaactat
gataaaagttttacgcaaaccctgatgaattatgcgcagtatgcaacccctgccagagcc
gcgaaatatgctgtcaatattctcttggcaaaaggtgacgacaagtgtaaagtgacagcg
acgaacttgctgcgaaacatcatgaaaggtctggactacggctcaccgcacttcttggca
agactagcatccatcgctcagcttgaacggcttgtgccgtccgtcacggcggattcagaa
aaggctattcatgagttgacactcaatcagatattgcgccaagtacgcacagacgccgag
gagaaagatccgtcatgggttgatgacgccgacatgaacgaggaactgcaagccaagtcc
ttgtcgttgaggatcctggtaaaccaagcccttgcctctgagactgagtccgacactgaa
gagcgagtcaaaagcgtgttcaagcttctcagaacctttattgtcaaggaaggcgaattt
tgcaaagttaaagataccccattacatcacaagaagcgcctgcgactcttggctggcctt
ctgatgttgaaactctgcacagtcaaagggtacgatgatagtttggagcccaccaccttc
aacaagatggcagagttggtacaggacagtgaactccaagtccgcagacattttatggaa
aagctgcagaactatctcacacgaaacaagctcaaaccgcgatttcatacaatcttgttc
ctagtcgccttcgaacctgcatcagatctaaagaaccgggtcgagacttggatacgatcc
cgagcacggtactacgacgacaagaagcaacgggtaatggaggctctcatggttcggctg
ataccgctactggcgcaccatccggactttagcccagaaattgacgacttggtcgacttt
gcgaattatttcttattctatctcaacacagttgccacggaagacaatatttccctgatt
tacagatacacagaaagagtcaagcaggtacaagacggaatcaagcctgaggctagtgat
aatctgtacgtgcttagtgatctcgcgtcgacagtaatccgtaaatatcaggagcgcaga
agctggatcttccaagcgcaccccgacaaggttggcgttccggcaggactttacactgcg
ctgccgtcgaccgaggtggcacagcgcattgcaaagaagctctacatccccgacgagatt
gacgagcggttggatgatttgcttcgcgcaatggaccgcaagaagaagcgcaagtctatc
catgaacacggcgacccgccagctaagcgggcaagaacacaaatcaagacagtcatcagg
gagaagtcgaaaccgaaatcctccaagtcgtcgaagaagagtgccaaacccaaaaaggta
cccaaggttaagaagcaaaaagaatcttcatccgccgctccatctgagcgccgccgtagt
ggacgcgcccacgcagtatccgactacaaggagcgagatgacgccgacgacgaggaagag
atgctcgagggcgtagcagagtgggactatggcaaggttgactctgacgcagaggagagt
ggaagtgaagagagttcagagcaatccgacgatgctgaatcaggcaacgaagatgacgag
gatgacgatgacgaggacaaagaagctacaacgaagcgtaatggttctaggggcgcggcg
tcgtcgccaaagggcaaagcatctgtcaaggcaagcgtcttggcgaaactagatcgcaca
tcgagagccagaggccgcggcaggggggcaaaggacgattcagaaatggatgtggacgag
taa
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